RNA id: TCONS_00019330


Basic Information

Item Value
RNA id TCONS_00019330
length 1514
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_009638
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4055331 ~ 4071526 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTGATAAATACATGGCTCTTGATCCAAGTTTAGGCACACAATCAGCAGACCAGTCCCACCAGAGTTTCCACTTATTAGTAAAGCTTCCCTCTGATGTCACTATTCTAGAGAAACAAAtagcagcagagagagagagaaagagagagagagagagagagaaagagggaaggGTAGAGGGTCAGACTGGCACTCTTAACTTCACCCACAGCTGCTGCAACTCCAGTCTAATCCCTGCTTTCCAACTGTACAGACAAGATGATGCTGGGAGGAATAAGTGGAATGGCTACTAGCAAGACACCGAGGTCTTCCAAAACAGGCTTCCTGTTTTTTCTACTAATGCAAATGAGTCTGCTGTGTGTAGTGAGGCCTCAGGATCCCATCACAACAGCATCTAcaacgtcatcatcatcatcatcatccactTCTCCAAcatcttcatcttcctcatcatcatcatcatcatcatcatcatcatcatctcagtCTGCCAGTACAGGTCTGAGCTCCTCTACTGGACAGACCACATCTATGGCCTCGTCCATCTCTTCAGTGACTTCATTCAGCACATACACTTCCTCTAACTCTACGATGTTATCTGGCAACAGTACAGGTAACGCAACAACAGGAAATTTCTCTATGACATCCTGTCCAGCATTTGTTTGCACTTCAGATTGCTACAACCAGTACATCAATACGACAGCGAAGCCCTGCCCATTGAATTCTAACTACTGTGAGATAACAATCAAATCGGACGCTAGTTACTCCGTCGGCTGCAGTAACATGTGTGGTATGTCCTGTGGGAACACGACTCTAAGCAATTGCACTTTGAGCTGCTGCAACACAACCAACTGTCTCTACAACACCATGGTGAACATCTCCAATCCATTCAGCACTGCAGCAACAACGTCCACCAGCACTACTTCAACCACGAAGTCCACTGCTGCAACCACCCCAGCCAACAATGGCAAGAAGTGTAATATCATCAACTGTAATGGAGCAGCATGTTACAAAACCGCATCGAATGCACCAAACTTCTGTCCCGTGGGTCAGGATTACTGCATGCTGAAGAAGACGGTCTCTGGCACGAGCGAGGCCTGGGAGGCCGGCTGCAGTACAGATTGCAGAAAGATGACCGCCTGCTCCACCTCCGTCACTGGCTCCTGCTACCTGGAGTGCTGTAACGCCACTGCCAGCACCTGCCTGAAGCTGACAGGTGATGTGAACATGCCCAGCTCCGCCACCAGAAGTCCTCAGTCTCCCGCGCTCATCGTGGCCTCCATACTGCTCCTCTGGATAGTCAGAGTCTTTACTTGAGTACAACAAAGTCACGTTTAAAGGCATTCTTCACCCAAAAGCTAAAAAATTGATTCACTAGAAGTTTTCCTGCCACAGATTTGTtggagtttctttcctctgttgaacacaaaagataatattctgaagaatgctggaaactgggAACCattagcttctgtttttgtcctactttgggccctatcatgcaCCGGGCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000128978

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021872 lncRNA upstream 107014 3928089 ~ 3948317 (+) True XLOC_009636
TCONS_00019328 lncRNA upstream 123284 3928066 ~ 3932047 (+) False XLOC_009636
TCONS_00019327 lncRNA upstream 240250 3809594 ~ 3815081 (+) True XLOC_009635
TCONS_00021677 lncRNA upstream 395914 3658327 ~ 3659417 (+) True XLOC_009634
TCONS_00021676 lncRNA upstream 461926 3591411 ~ 3593405 (+) True XLOC_009633
TCONS_00019333 lncRNA downstream 16265 4087791 ~ 4089002 (+) True XLOC_009639
TCONS_00021678 lncRNA downstream 61011 4132537 ~ 4139166 (+) False XLOC_009640
TCONS_00021679 lncRNA downstream 62230 4133756 ~ 4139166 (+) False XLOC_009640
TCONS_00021873 lncRNA downstream 80986 4152512 ~ 4156503 (+) False XLOC_009640
TCONS_00021680 lncRNA downstream 96725 4168251 ~ 4175024 (+) True XLOC_009640
TCONS_00019329 mRNA upstream 53588 3982590 ~ 4001743 (+) True XLOC_009637
TCONS_00019325 mRNA upstream 865532 3185541 ~ 3189799 (+) True XLOC_009630
TCONS_00019323 mRNA upstream 958586 3067134 ~ 3096745 (+) False XLOC_009626
TCONS_00019324 mRNA upstream 959419 3068080 ~ 3095912 (+) True XLOC_009626
TCONS_00019322 mRNA upstream 1028091 3004422 ~ 3027240 (+) True XLOC_009624
TCONS_00019331 mRNA downstream 6714 4078240 ~ 4088460 (+) False XLOC_009639
TCONS_00019332 mRNA downstream 7082 4078608 ~ 4131804 (+) False XLOC_009639
TCONS_00019334 mRNA downstream 61011 4132537 ~ 4168294 (+) False XLOC_009640
TCONS_00019336 mRNA downstream 61993 4133519 ~ 4168294 (+) False XLOC_009640
TCONS_00019335 mRNA downstream 61993 4133519 ~ 4168294 (+) False XLOC_009640
TCONS_00019326 other upstream 701714 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019314 other upstream 1325842 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 1771157 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 2314273 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 2834769 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019348 other downstream 626287 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 698853 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 702607 4774133 ~ 4776956 (+) True XLOC_009652
TCONS_00019358 other downstream 802838 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019362 other downstream 1112876 5184402 ~ 5231397 (+) False XLOC_009657

Expression Profile

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