Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019333 |
| length | 869 |
| lncRNA type | retained_intron |
| GC content | 0.37 |
| exon number | 2 |
| gene id | XLOC_009639 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 4078240 ~ 4131804 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046855 | inositol phosphate dephosphorylation | biological_process |
| GO:0046856 | phosphatidylinositol dephosphorylation | biological_process |
| GO:0071871 | response to epinephrine | biological_process |
| GO:0032402 | melanosome transport | biological_process |
| GO:0070121 | Kupffer's vesicle development | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0039023 | pronephric duct morphogenesis | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0052658 | inositol-1,4,5-trisphosphate 5-phosphatase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0052745 | inositol phosphate phosphatase activity | molecular_function |
| GO:0004439 | phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-110411-228 | Predicted to enable inositol-1,4,5-trisphosphate 5-phosphatase activity and phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and pronephric duct morphogenesis. Predicted to be located in early endosome membrane and phagocytic vesicle membrane. Predicted to be active in cytosol and membrane. Orthologous to human INPP5B (inositol polyphosphate-5-phosphatase B). |
| ensembl_id | ENSDART00000170038 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021872 | lncRNA | upstream | 139474 | 3928089 ~ 3948317 (+) | True | XLOC_009636 |
| TCONS_00019328 | lncRNA | upstream | 155744 | 3928066 ~ 3932047 (+) | False | XLOC_009636 |
| TCONS_00019327 | lncRNA | upstream | 272710 | 3809594 ~ 3815081 (+) | True | XLOC_009635 |
| TCONS_00021677 | lncRNA | upstream | 428374 | 3658327 ~ 3659417 (+) | True | XLOC_009634 |
| TCONS_00021676 | lncRNA | upstream | 494386 | 3591411 ~ 3593405 (+) | True | XLOC_009633 |
| TCONS_00021678 | lncRNA | downstream | 43535 | 4132537 ~ 4139166 (+) | False | XLOC_009640 |
| TCONS_00021679 | lncRNA | downstream | 44754 | 4133756 ~ 4139166 (+) | False | XLOC_009640 |
| TCONS_00021873 | lncRNA | downstream | 63510 | 4152512 ~ 4156503 (+) | False | XLOC_009640 |
| TCONS_00021680 | lncRNA | downstream | 79249 | 4168251 ~ 4175024 (+) | True | XLOC_009640 |
| TCONS_00021874 | lncRNA | downstream | 227167 | 4316169 ~ 4316607 (+) | True | XLOC_009642 |
| TCONS_00019330 | mRNA | upstream | 16265 | 4055331 ~ 4071526 (+) | True | XLOC_009638 |
| TCONS_00019329 | mRNA | upstream | 86048 | 3982590 ~ 4001743 (+) | True | XLOC_009637 |
| TCONS_00019325 | mRNA | upstream | 897992 | 3185541 ~ 3189799 (+) | True | XLOC_009630 |
| TCONS_00019323 | mRNA | upstream | 991046 | 3067134 ~ 3096745 (+) | False | XLOC_009626 |
| TCONS_00019324 | mRNA | upstream | 991879 | 3068080 ~ 3095912 (+) | True | XLOC_009626 |
| TCONS_00019334 | mRNA | downstream | 43535 | 4132537 ~ 4168294 (+) | False | XLOC_009640 |
| TCONS_00019336 | mRNA | downstream | 44517 | 4133519 ~ 4168294 (+) | False | XLOC_009640 |
| TCONS_00019335 | mRNA | downstream | 44517 | 4133519 ~ 4168294 (+) | False | XLOC_009640 |
| TCONS_00019337 | mRNA | downstream | 49329 | 4138331 ~ 4166452 (+) | False | XLOC_009640 |
| TCONS_00019338 | mRNA | downstream | 49377 | 4138379 ~ 4168888 (+) | False | XLOC_009640 |
| TCONS_00019326 | other | upstream | 734174 | 3353501 ~ 3353617 (+) | True | XLOC_009631 |
| TCONS_00019314 | other | upstream | 1358302 | 2729373 ~ 2729489 (+) | True | XLOC_009620 |
| TCONS_00019309 | other | upstream | 1803617 | 2284056 ~ 2284174 (+) | True | XLOC_009616 |
| TCONS_00019306 | other | upstream | 2346733 | 1740937 ~ 1741058 (+) | True | XLOC_009612 |
| TCONS_00019299 | other | upstream | 2867229 | 1220446 ~ 1220562 (+) | True | XLOC_009606 |
| TCONS_00019348 | other | downstream | 608811 | 4697813 ~ 4707300 (+) | False | XLOC_009649 |
| TCONS_00019354 | other | downstream | 681377 | 4770379 ~ 4779952 (+) | False | XLOC_009652 |
| TCONS_00019355 | other | downstream | 685131 | 4774133 ~ 4776956 (+) | True | XLOC_009652 |
| TCONS_00019358 | other | downstream | 785362 | 4874364 ~ 4874481 (+) | True | XLOC_009654 |
| TCONS_00019362 | other | downstream | 1095400 | 5184402 ~ 5231397 (+) | False | XLOC_009657 |
