RNA id: TCONS_00021873


Basic Information

Item Value
RNA id TCONS_00021873
length 401
lncRNA type sense_over
GC content 0.53
exon number 2
gene id XLOC_009640
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4132537 ~ 4175024 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCATTTTCCTCTCTTTTTCTCCATCTCAGGTGAAGAGATACCAGTGTCTGTTCGAAGGCTGTACGCGCACCTACAGCACGGCGGGAAACCTGCGCACTCATCAGAAGACGCACCGTGGCGAATACACGTTTGTTTGCAACCAGCAAGGCTGCGGCAAAGCCTTCCTCACATCCTACAGCCTGAAGATCCACGTCCGCGTCCACACAAAGGAAAAACCCTTCGAGTGTGACGTCCAGGGCTGTGAGAAAGCCTTCAACACTCTCTACAGACTGAAAGCACACCAGAGGCTGCACACCGGGAAGACGTTTAACTGTGAATCAGAGGGATGCACCAAGTACTTCACCACACTCAGTGACCTGAGGAAGCACATCCGCACACACACTGGCGAAAAACCCTTCCG

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009056 catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0044242 cellular lipid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021678 lncRNA upstream 13346 4132537 ~ 4139166 (+) False XLOC_009640
TCONS_00021679 lncRNA upstream 13346 4133756 ~ 4139166 (+) False XLOC_009640
TCONS_00019333 lncRNA upstream 63510 4087791 ~ 4089002 (+) True XLOC_009639
TCONS_00021872 lncRNA upstream 204195 3928089 ~ 3948317 (+) True XLOC_009636
TCONS_00019328 lncRNA upstream 220465 3928066 ~ 3932047 (+) False XLOC_009636
TCONS_00021680 lncRNA downstream 11748 4168251 ~ 4175024 (+) True XLOC_009640
TCONS_00021874 lncRNA downstream 159666 4316169 ~ 4316607 (+) True XLOC_009642
TCONS_00021875 lncRNA downstream 174456 4330959 ~ 4335864 (+) True XLOC_009643
TCONS_00021876 lncRNA downstream 266118 4422621 ~ 4427294 (+) True XLOC_009644
TCONS_00021877 lncRNA downstream 402608 4559111 ~ 4559912 (+) True XLOC_009647
TCONS_00019332 mRNA upstream 20708 4078608 ~ 4131804 (+) False XLOC_009639
TCONS_00019331 mRNA upstream 64052 4078240 ~ 4088460 (+) False XLOC_009639
TCONS_00019330 mRNA upstream 80986 4055331 ~ 4071526 (+) True XLOC_009638
TCONS_00019329 mRNA upstream 150769 3982590 ~ 4001743 (+) True XLOC_009637
TCONS_00019325 mRNA upstream 962713 3185541 ~ 3189799 (+) True XLOC_009630
TCONS_00019339 mRNA downstream 22446 4178949 ~ 4189851 (+) False XLOC_009641
TCONS_00019340 mRNA downstream 24602 4181105 ~ 4189851 (+) False XLOC_009641
TCONS_00019341 mRNA downstream 26356 4182859 ~ 4190726 (+) True XLOC_009641
TCONS_00019342 mRNA downstream 340799 4497302 ~ 4512795 (+) False XLOC_009645
TCONS_00019343 mRNA downstream 340834 4497337 ~ 4512795 (+) True XLOC_009645
TCONS_00019326 other upstream 798895 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019314 other upstream 1423023 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 1868338 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 2411454 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 2931950 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019348 other downstream 541310 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 613876 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 617630 4774133 ~ 4776956 (+) True XLOC_009652
TCONS_00019358 other downstream 717861 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019362 other downstream 1027899 5184402 ~ 5231397 (+) False XLOC_009657

Expression Profile

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