RNA id: TCONS_00019339


Basic Information

Item Value
RNA id TCONS_00019339
length 1687
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_009641
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4178949 ~ 4190726 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAACTTAATTGAAACTAAGAAGGTGAAATAGTCATATTTTAAAAGACATGGGGGTTTCAAAAAGAAACGATTCAATACAAACACATTAATATCAAGAATTCATTTCAAGACTTTATTCATACGCAGAAGTTTCAGATCATAATTTAACAAGCAGCTCAGTTATCTGgtttaaatgttgtattttcaAGTCCTCTTTTCTAcaagaatgaatatttaaattagtCACGTTGCAAACaccaaatatacattttaaaatcatcaaataaatgtataaaatgaacAACATACAGCAACTATTTTCTGAATTTCCAGCAGGTCGTTCAGGATCATAGTGCAGAGCTCCATCTGCTCTTCTCTTTCGGAGATCCGCCCATCAAGATCCTCCAGATGACTCACAGAAGGACTCTGTTAAAAGTTACatttattattgcatttaataaactattttaatagtcaagacaaaaaaaatacgGTTTACTTGAGTTGAAGACTCCGTTGTACCACCAGTGTTTTCTGAGTGCGAACATTTATGAGAAATATTAACGTTATTCATtaaccacacacacaaatacacaaatcttACCTCCAGCTGACGCCATTTTAGTTTTACTTGTAAAGAAGAACGGTCTAAAATATATCGGTTATCATTAGTCCTAATTGCGTGATTAATAGGTGTTAACATGATACACCTGGATGATTCACTCTTAATTTTGTTGATCCTGCGAGACTAAAATATCTCCGtgaattttagtttatttgtttaagcTGCAGTTTTGAAggagcttttattttgaagtgctGTCAACATGCTTTGATAGCGAGAGCGCGTCGAGAGAAGACGACGGGTAGACAGCATAGACAACGCTTTCAGCCTTGcgataaaaaataaagtctcggATAACAAGTGTTTTCGTGCTGCCAGCCTTCGTTTAGGAGTTTGTTCGAGCACCAGATACAAGTCGTTTAAACGCGATATAATGTGTAAAGAGCTGAAGACGAGAGTCCTGCGGATTTCATCTAATTTCTCTGATGACCTGACGTTACATCAGCCGGAGTGGACGGAGATCCTGAGCTGTACAGTGAATGCTCTGAAGGCGGGTCAGGTGGTGGCAGTGCCCACCGACACCATCTACGGCCTGGCCTGTGTGGCGCAAAACTCTGAGGCCATTAGAAGAGTCTACGACATCAAGGGCAGGAATGGAGACAAACCCCTGGCCATCTGTGTCGGAGAAATCCACGACATATACAAGTACTGTAAAGTGTCTGTGAAGGACAGGCTGCTCAGAGATCTGCTTCCCGGACCTGTTACACTCGTTCTAGAAAGATCCGCCACGCTAAACGGAGATCTCAATCCTTTTACCAAGCTCATAGGGGTCCGTATTCCAGACCACCCGTTCATGAGGCGTCTCTGTCAGATGTGCGACACACCGCTAGCTCTCACCAGCGCTAACGTCAGCACTCAATCCAGCACTGTCGCCGCTAACGAGTTTGAGGATTTGTGGCCCCGTCTGGCCGTTGTTGTGGACGGGGGCCCGATTGAAGATAAGAGCCGCTTGGGATCAACAGTTGTGGATCTGTCTGTGTGTGGCAGATACCGAATCATCAGACCGGGATGCGCTCTCTCTGCTACAGTTCAAATACTTGAAGGCAGATATGGACTGCTGGAGGATCCTGACCATCGCTGA

Function

GO:

id name namespace
GO:0006450 regulation of translational fidelity biological_process
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003725 double-stranded RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-65 Predicted to enable nucleotidyltransferase activity and tRNA binding activity. Predicted to be involved in regulation of translational fidelity. Predicted to be active in cytoplasm. Orthologous to human YRDC (yrdC N6-threonylcarbamoyltransferase domain containing).

Ensembl:

ensembl_id ENSDART00000188592

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021680 lncRNA upstream 3925 4168251 ~ 4175024 (+) True XLOC_009640
TCONS_00021873 lncRNA upstream 22446 4152512 ~ 4156503 (+) False XLOC_009640
TCONS_00021678 lncRNA upstream 39783 4132537 ~ 4139166 (+) False XLOC_009640
TCONS_00021679 lncRNA upstream 39783 4133756 ~ 4139166 (+) False XLOC_009640
TCONS_00019333 lncRNA upstream 89947 4087791 ~ 4089002 (+) True XLOC_009639
TCONS_00021874 lncRNA downstream 126318 4316169 ~ 4316607 (+) True XLOC_009642
TCONS_00021875 lncRNA downstream 141108 4330959 ~ 4335864 (+) True XLOC_009643
TCONS_00021876 lncRNA downstream 232770 4422621 ~ 4427294 (+) True XLOC_009644
TCONS_00021877 lncRNA downstream 369260 4559111 ~ 4559912 (+) True XLOC_009647
TCONS_00019349 lncRNA downstream 516990 4706841 ~ 4707668 (+) True XLOC_009649
TCONS_00019338 mRNA upstream 10061 4138379 ~ 4168888 (+) False XLOC_009640
TCONS_00019334 mRNA upstream 10655 4132537 ~ 4168294 (+) False XLOC_009640
TCONS_00019336 mRNA upstream 10655 4133519 ~ 4168294 (+) False XLOC_009640
TCONS_00019335 mRNA upstream 10655 4133519 ~ 4168294 (+) False XLOC_009640
TCONS_00019337 mRNA upstream 12497 4138331 ~ 4166452 (+) False XLOC_009640
TCONS_00019342 mRNA downstream 307451 4497302 ~ 4512795 (+) False XLOC_009645
TCONS_00019343 mRNA downstream 307486 4497337 ~ 4512795 (+) True XLOC_009645
TCONS_00019344 mRNA downstream 341879 4531730 ~ 4540914 (+) True XLOC_009646
TCONS_00019345 mRNA downstream 464482 4654333 ~ 4685930 (+) False XLOC_009648
TCONS_00019346 mRNA downstream 468399 4658250 ~ 4686245 (+) True XLOC_009648
TCONS_00019326 other upstream 825332 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019314 other upstream 1449460 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 1894775 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 2437891 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 2958387 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019348 other downstream 507962 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 580528 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 584282 4774133 ~ 4776956 (+) True XLOC_009652
TCONS_00019358 other downstream 684513 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019362 other downstream 994551 5184402 ~ 5231397 (+) False XLOC_009657

Expression Profile

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