RNA id: TCONS_00021874


Basic Information

Item Value
RNA id TCONS_00021874
length 439
lncRNA type intronic
GC content 0.45
exon number 1
gene id XLOC_009642
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4316169 ~ 4316607 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttacaacaGAGAAACCTTCTATAATCTTCATAAGGGACCTTATTTGTCATTCAAAGAGGCTCCAGAGAGCCAATCATCTTCCAGCAATCCTTCAGACTATTCTTCTTTCCCGCCTACAGATTAGTCTcgccatggtgtgtgtgtgtgtgaccggtTGCTGGTTGCTCGCGTTACTGCAGGTGGTGGACTGGCGCAACAACTCTCGGTGTTGCGTGAGAATCTCCCCGGTTTGCCTCTCTGACCATCTGCTACATATATAAGCAGACGTTTCTTGTTCTCTTATTTTCTGCATTTAACATTGAGACAACCACGACTGCCCGCCGAGGTAAAAATTTACCTCAGGCGAATGTGTTTCTTGACAGCAGACATGCACTCTCGTGCCACTATtcaagtaaatgaattaattaggCGGGAGACAAAGAAAAGCAGGATTTCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021680 lncRNA upstream 141145 4168251 ~ 4175024 (+) True XLOC_009640
TCONS_00021873 lncRNA upstream 159666 4152512 ~ 4156503 (+) False XLOC_009640
TCONS_00021678 lncRNA upstream 177003 4132537 ~ 4139166 (+) False XLOC_009640
TCONS_00021679 lncRNA upstream 177003 4133756 ~ 4139166 (+) False XLOC_009640
TCONS_00019333 lncRNA upstream 227167 4087791 ~ 4089002 (+) True XLOC_009639
TCONS_00021875 lncRNA downstream 14352 4330959 ~ 4335864 (+) True XLOC_009643
TCONS_00021876 lncRNA downstream 106014 4422621 ~ 4427294 (+) True XLOC_009644
TCONS_00021877 lncRNA downstream 242504 4559111 ~ 4559912 (+) True XLOC_009647
TCONS_00019349 lncRNA downstream 390234 4706841 ~ 4707668 (+) True XLOC_009649
TCONS_00021878 lncRNA downstream 392128 4708735 ~ 4711728 (+) False XLOC_009650
TCONS_00019341 mRNA upstream 125443 4182859 ~ 4190726 (+) True XLOC_009641
TCONS_00019339 mRNA upstream 126318 4178949 ~ 4189851 (+) False XLOC_009641
TCONS_00019340 mRNA upstream 126318 4181105 ~ 4189851 (+) False XLOC_009641
TCONS_00019338 mRNA upstream 147281 4138379 ~ 4168888 (+) False XLOC_009640
TCONS_00019334 mRNA upstream 147875 4132537 ~ 4168294 (+) False XLOC_009640
TCONS_00019342 mRNA downstream 180695 4497302 ~ 4512795 (+) False XLOC_009645
TCONS_00019343 mRNA downstream 180730 4497337 ~ 4512795 (+) True XLOC_009645
TCONS_00019344 mRNA downstream 215123 4531730 ~ 4540914 (+) True XLOC_009646
TCONS_00019345 mRNA downstream 337726 4654333 ~ 4685930 (+) False XLOC_009648
TCONS_00019346 mRNA downstream 341643 4658250 ~ 4686245 (+) True XLOC_009648
TCONS_00019326 other upstream 962552 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019314 other upstream 1586680 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 2031995 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 2575111 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 3095607 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019348 other downstream 381206 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 453772 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 457526 4774133 ~ 4776956 (+) True XLOC_009652
TCONS_00019358 other downstream 557757 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019362 other downstream 867795 5184402 ~ 5231397 (+) False XLOC_009657

Expression Profile

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