RNA id: TCONS_00021876


Basic Information

Item Value
RNA id TCONS_00021876
length 468
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_009644
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4422621 ~ 4427294 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACAAGATGCACTGTGCGCGCGGTTAATCTTCCATACCAAAAAACATACGAGGCAACCCAAAACATCAGATTGTGGGCTGGAGGAAAAAAAGGAGAGAGATCCATGACCAACACATCTGAAATGTGTTTGGTTTGGTAATTATCTTTACAGACTACACATTTCCTTTTTCACCGTCACTTTTTCTCAATTACGCACTCACAAAATAGAGACCTTAAGTGCAGAAGGAAGCCATAGAACTCGATAAGCTGAAAGCTCAGCGGACCTTGTCACTACACCTAAACTCTGCCAGATGTGGGTTTGAAGAAAGCGAGCGAACACACCAGCCAGGCCCGGGTTCAAGGGCTAAATGACTAGAGCTGGGTTCAAGATGGATGCACGGCAGCTGCTTACATTGCTGCATGTCCTGGAGCAACAGAGGCGTTTACTGTGGGAACGAGAGCTTGGAGGAGATGCAGGCCGAGGGAGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021875 lncRNA upstream 86757 4330959 ~ 4335864 (+) True XLOC_009643
TCONS_00021874 lncRNA upstream 106014 4316169 ~ 4316607 (+) True XLOC_009642
TCONS_00021680 lncRNA upstream 247597 4168251 ~ 4175024 (+) True XLOC_009640
TCONS_00021873 lncRNA upstream 266118 4152512 ~ 4156503 (+) False XLOC_009640
TCONS_00021678 lncRNA upstream 283455 4132537 ~ 4139166 (+) False XLOC_009640
TCONS_00021877 lncRNA downstream 131817 4559111 ~ 4559912 (+) True XLOC_009647
TCONS_00019349 lncRNA downstream 279547 4706841 ~ 4707668 (+) True XLOC_009649
TCONS_00021878 lncRNA downstream 281441 4708735 ~ 4711728 (+) False XLOC_009650
TCONS_00021879 lncRNA downstream 281528 4708822 ~ 4711728 (+) True XLOC_009650
TCONS_00019372 lncRNA downstream 1068878 5496172 ~ 5496763 (+) True XLOC_009658
TCONS_00019341 mRNA upstream 231895 4182859 ~ 4190726 (+) True XLOC_009641
TCONS_00019339 mRNA upstream 232770 4178949 ~ 4189851 (+) False XLOC_009641
TCONS_00019340 mRNA upstream 232770 4181105 ~ 4189851 (+) False XLOC_009641
TCONS_00019338 mRNA upstream 253733 4138379 ~ 4168888 (+) False XLOC_009640
TCONS_00019337 mRNA upstream 256169 4138331 ~ 4166452 (+) False XLOC_009640
TCONS_00019342 mRNA downstream 70008 4497302 ~ 4512795 (+) False XLOC_009645
TCONS_00019343 mRNA downstream 70043 4497337 ~ 4512795 (+) True XLOC_009645
TCONS_00019344 mRNA downstream 104436 4531730 ~ 4540914 (+) True XLOC_009646
TCONS_00019345 mRNA downstream 227039 4654333 ~ 4685930 (+) False XLOC_009648
TCONS_00019346 mRNA downstream 230956 4658250 ~ 4686245 (+) True XLOC_009648
TCONS_00019326 other upstream 1069004 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019314 other upstream 1693132 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 2138447 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 2681563 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 3202059 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019348 other downstream 270519 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 343085 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 346839 4774133 ~ 4776956 (+) True XLOC_009652
TCONS_00019358 other downstream 447070 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019362 other downstream 757108 5184402 ~ 5231397 (+) False XLOC_009657