RNA id: TCONS_00019342


Basic Information

Item Value
RNA id TCONS_00019342
length 1525
RNA type mRNA
GC content 0.47
exon number 10
gene id XLOC_009645
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4497302 ~ 4512795 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGCTGACAAATCTGACAACCAGCAGCATGTCTTCGAAAACTCGGTTTTCTATGATCCACAGTCCTCAGAAAACCAACAGGACAACACCGACATCCAAgTCTTTCCCTCGGTGTAATAAGAAGAATTCCGGCAGTCCTGTTGGAGAGGAACCAAACAAAATGACTGAGACCGAAATAGCACAAATAGGGAAGCCTTTGCGTCAGAATATTTGCGTAGAGATGCTTCGAGACGGCTTTCCACACTCATTTAAGGAGCTGTTCGCACTTCTGCAGCGCTGGGATGAAGAGGACGACGATCCGCTCAAACTGCAGACTCTACAGCTTCACCTCACTCGGGCTGAGGCAGCAGAGAGATCTGAAAAGTATGATGAGGCGTATGAGAACCACATGCTTATGGCCAGGTTTTTCACAGAGGACAAATGGATGAAGCATCATTTCCTTGAGCTGGCACTCCGTTCAGCTCGCAAGGTCATAATGGACTCTGGCAAAAGAGAAGCTGAGGCCAGGTCACTTGTGGGACAAGCTTATTTAGAGAAAGGTGATCTTGAGCTTGCACAAGAGCATTTGGAGGTGTTTTATCAGCTAACCGCAGGCCGAACTTGGCAGGACAGCAACGGCCGGATGCAGCACTCTCGCTCATGTGAAGAGCTCCAGACGGTCTACACGCTGATGGCACAGAGATCTCTGCAGGATCAACAATATGAGCAGGCCATTAAGATGTCTAGAAAGGCCTATACTATTGCTAAAGAGTCGGGAGATCGAGCGCTGGAAGGAGAGGCCGCCTATAGACTGGGTCTAGCCTATCAGAGCACAGGAGACCAGAAGATTGCTATGAAGTTTTTAAGCTCATATATGGAGATCGCCTTGACACTTGAAGACACAGACAGTCTGGGAAGAGCACATGAAGCCATGGCCAAATGTCTGGAGAGTGAAGGCAAAATAACTGAGGCAATTGAATTATGGGAGAAGTATGTTGAGACATGTAAAAGCAGCAAACATGACCAAAACCTGGAGAGAGCCTATATGAACCTCGGACACATCCTCAAATCTCAGaAGCGGTACGGCGAAGCTCGTGTGTATTTTGAGCGCGCGTTTGAGCTTGTCTGTCTTGAGGGTTGTCCGAGGAGAGTGCAGGAAGCTCAGGTGTATGTGGGCATTACTCGTGCGCTCAGCACTTTTCCCGCATATATGAAACTCATACAAGACCAGAACTTAGACGCACTACTCGCCTGGAAGGACAGGCGAGAGGACCGCTTCAGTTCGGCAGCATCAAGTGAGCCAGAGTCAACAGCTCTGTCTAACACTGTCGTTCCATGACTCGCACTCTCTACTGGAAATGAAGAGTGGACTGATGAAATGTCTAAATAAAGTATTGGGTTAATGAGCCCTTTTGGTTTAAAGGGCTCTAATTTTAGTCTTTTAACAAGATGTTAAATAAGTCTGTGACATTTCGTTCCACTGTAGGTCCACGCTTAAACTTAAACTGTATTGTCAACAATATCGTTATCGCAATAAACGCCAAAAC

Function

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-100922-181 Human ortholog(s) of this gene implicated in spermatogenic failure 42. Orthologous to human TTC29 (tetratricopeptide repeat domain 29).

Ensembl:

ensembl_id ENSDART00000081826

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021876 lncRNA upstream 70008 4422621 ~ 4427294 (+) True XLOC_009644
TCONS_00021875 lncRNA upstream 161438 4330959 ~ 4335864 (+) True XLOC_009643
TCONS_00021874 lncRNA upstream 180695 4316169 ~ 4316607 (+) True XLOC_009642
TCONS_00021680 lncRNA upstream 322278 4168251 ~ 4175024 (+) True XLOC_009640
TCONS_00021873 lncRNA upstream 340799 4152512 ~ 4156503 (+) False XLOC_009640
TCONS_00021877 lncRNA downstream 46316 4559111 ~ 4559912 (+) True XLOC_009647
TCONS_00019349 lncRNA downstream 194046 4706841 ~ 4707668 (+) True XLOC_009649
TCONS_00021878 lncRNA downstream 195940 4708735 ~ 4711728 (+) False XLOC_009650
TCONS_00021879 lncRNA downstream 196027 4708822 ~ 4711728 (+) True XLOC_009650
TCONS_00019372 lncRNA downstream 983377 5496172 ~ 5496763 (+) True XLOC_009658
TCONS_00019341 mRNA upstream 306576 4182859 ~ 4190726 (+) True XLOC_009641
TCONS_00019339 mRNA upstream 307451 4178949 ~ 4189851 (+) False XLOC_009641
TCONS_00019340 mRNA upstream 307451 4181105 ~ 4189851 (+) False XLOC_009641
TCONS_00019338 mRNA upstream 328414 4138379 ~ 4168888 (+) False XLOC_009640
TCONS_00019334 mRNA upstream 329008 4132537 ~ 4168294 (+) False XLOC_009640
TCONS_00019344 mRNA downstream 18935 4531730 ~ 4540914 (+) True XLOC_009646
TCONS_00019345 mRNA downstream 141538 4654333 ~ 4685930 (+) False XLOC_009648
TCONS_00019346 mRNA downstream 145455 4658250 ~ 4686245 (+) True XLOC_009648
TCONS_00019347 mRNA downstream 182280 4695075 ~ 4707668 (+) False XLOC_009649
TCONS_00019350 mRNA downstream 213034 4725829 ~ 4739346 (+) False XLOC_009651
TCONS_00019326 other upstream 1143685 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019314 other upstream 1767813 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 2213128 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 2756244 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 3276740 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019348 other downstream 185018 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019354 other downstream 257584 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 261338 4774133 ~ 4776956 (+) True XLOC_009652
TCONS_00019358 other downstream 361569 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019362 other downstream 671607 5184402 ~ 5231397 (+) False XLOC_009657

Expression Profile

//