RNA id: TCONS_00019349


Basic Information

Item Value
RNA id TCONS_00019349
length 756
lncRNA type retained_intron
GC content 0.39
exon number 2
gene id XLOC_009649
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4695075 ~ 4707668 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCATCATAGATTATCCTTAACTTATCATTGAAGTGTCAGATTAATGTAATCATGTTCATGTAGCTTGTGTTGTACATTGCAGTTATATATGGTGCTTTCTTTAGAGTGCGCTGATCTTTAAAGACGTGAGAGTAAGAGGTTTTTGGGTGACCCAGTGGAAGAGAGACAACAGACACGATGATGAAGCCTTACGACACATGCTGGATGAACTCTGCATCCTGATCCGCGCTGGGAAACTGTCGGCTCCAATCTGCACACAAGTACAGCTTCAAGACTTCCGGAAAGCTCTAGAAAACGCCATGAAGCCGTATGTGTCCACCAAACAGGTTTTTGTCAtgtgaatgcaaccccaaacacATGTATAATAAACATGACATCAAAGTCCAGTGAGCGTTATCAGGTTGTCAACAGGGTTTTGGCAATGCCTTTGATTTTGCTGGTATTTATTATATGCTGGGAATTTATGAGCATCATAATGATTATCAGCATGTTAGTCTATATTGAGCACTCACTGATAATCAAACATGCTCAGAGCTTGTGTTGTTGCCGTTTTGCTTTGTCACATGAGCTCAATCAAACATGTAGATCTTCATATCGTGGGTTTGTGTTAAAGATACACACTAGAGTGTGATCTATAAAACACCGGTCATTGACTGAACGATAAAAGAAAGGCAAGATGTCTTTCCTTATATTATTTAGAGCAAAGTTATCAACACATTGTCAATGTTAATGAATATAAAGCATTTGATAAAAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity molecular_function

KEGG:

id description
ko00061 Fatty acid biosynthesis
ko00062 Fatty acid elongation

ZFIN:

id description
ZDB-GENE-050417-399 Predicted to enable trans-2-enoyl-CoA reductase (NADPH) activity. Predicted to be involved in fatty acid metabolic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in dystonia. Orthologous to human MECR (mitochondrial trans-2-enoyl-CoA reductase).

Ensembl:

ensembl_id ENSDART00000150142

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021877 lncRNA upstream 146929 4559111 ~ 4559912 (+) True XLOC_009647
TCONS_00021876 lncRNA upstream 279547 4422621 ~ 4427294 (+) True XLOC_009644
TCONS_00021875 lncRNA upstream 370977 4330959 ~ 4335864 (+) True XLOC_009643
TCONS_00021874 lncRNA upstream 390234 4316169 ~ 4316607 (+) True XLOC_009642
TCONS_00021680 lncRNA upstream 531817 4168251 ~ 4175024 (+) True XLOC_009640
TCONS_00021878 lncRNA downstream 1067 4708735 ~ 4711728 (+) False XLOC_009650
TCONS_00021879 lncRNA downstream 1154 4708822 ~ 4711728 (+) True XLOC_009650
TCONS_00019372 lncRNA downstream 788504 5496172 ~ 5496763 (+) True XLOC_009658
TCONS_00021681 lncRNA downstream 791606 5499274 ~ 5502699 (+) True XLOC_009659
TCONS_00021880 lncRNA downstream 1687635 6395303 ~ 6421449 (+) False XLOC_009668
TCONS_00019346 mRNA upstream 20596 4658250 ~ 4686245 (+) True XLOC_009648
TCONS_00019345 mRNA upstream 20911 4654333 ~ 4685930 (+) False XLOC_009648
TCONS_00019344 mRNA upstream 165927 4531730 ~ 4540914 (+) True XLOC_009646
TCONS_00019342 mRNA upstream 194046 4497302 ~ 4512795 (+) False XLOC_009645
TCONS_00019343 mRNA upstream 194046 4497337 ~ 4512795 (+) True XLOC_009645
TCONS_00019350 mRNA downstream 18161 4725829 ~ 4739346 (+) False XLOC_009651
TCONS_00019351 mRNA downstream 18161 4725829 ~ 4746492 (+) False XLOC_009651
TCONS_00019352 mRNA downstream 18180 4725848 ~ 4735283 (+) True XLOC_009651
TCONS_00019353 mRNA downstream 62598 4770266 ~ 4796565 (+) False XLOC_009652
TCONS_00019356 mRNA downstream 131140 4838808 ~ 4895521 (+) False XLOC_009653
TCONS_00019326 other upstream 1353224 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019314 other upstream 1977352 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 2422667 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 2965783 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019299 other upstream 3486279 1220446 ~ 1220562 (+) True XLOC_009606
TCONS_00019354 other downstream 62711 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 66465 4774133 ~ 4776956 (+) True XLOC_009652
TCONS_00019358 other downstream 166696 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019362 other downstream 476734 5184402 ~ 5231397 (+) False XLOC_009657
TCONS_00019367 other downstream 569008 5276676 ~ 5446774 (+) False XLOC_009658

Expression Profile

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