RNA id: TCONS_00021878


Basic Information

Item Value
RNA id TCONS_00021878
length 787
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_009650
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4708735 ~ 4711728 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtaatattgaaaaaaattactattgcggtatgacggtatttacaatattgttacatccctacttaataacagttgtcataaacATGCATAAAATTTCATACATATTCATGACGTgttatgtcatgattataaaggtgttaTGGCAGTCTTATGAGCAACCCCTTCAAGAAAAAGTGTTACCTAATACTCTTTAAAATCTGATCCTGTCTATATGAAATGCATAATAATATATGAACTGAcagacctgttgctatgacaGCAACTTATGATTGTATCAAATCATGATTCACCAATAAAGAGTGAACCCCAGGTGCCAAAACAGGCCCAAATTGATTAAATATATGTGAATATTAAATGCTAAGTTAATCAActactatttaaaaacaaaaacaaagtagtCAGTAGGATCAATTGAGACTCCACAGACTGAGCATTAGAGAAAGAAACAAAATGAACAGCACCGGAGCATTGGACGATCCTCCCTCCTTCAACACACACTTCTCATAGGCGTCATAGTCCACTTCCCTCAGCGCACACACATGATCCACACGGCAGTCTGCGTGACACTCCGACAGGTCGTAGCTGACCGAGTTCAGCTCAAAGTACTTCTGTAGGGAACACTTTTCACTGGAAATCCGCTCCATCACACGGTGCATGGAGGCTGGAGAGGCGTCTGGCACGCGAAAGGCCTCCGTCAGGCGGTACTCCTTCTCCCAGCGCGCACGTGCAATGTTTGCATATGTCAGGTTCAGGTAGTAGGTGATGATGTCCTGtgggatttgttttg

Function

GO:

id name namespace
GO:0090278 negative regulation of peptide hormone secretion biological_process
GO:0090075 relaxation of muscle biological_process
GO:0045202 synapse cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019349 lncRNA upstream 1067 4706841 ~ 4707668 (+) True XLOC_009649
TCONS_00021877 lncRNA upstream 148823 4559111 ~ 4559912 (+) True XLOC_009647
TCONS_00021876 lncRNA upstream 281441 4422621 ~ 4427294 (+) True XLOC_009644
TCONS_00021875 lncRNA upstream 372871 4330959 ~ 4335864 (+) True XLOC_009643
TCONS_00021874 lncRNA upstream 392128 4316169 ~ 4316607 (+) True XLOC_009642
TCONS_00019372 lncRNA downstream 784444 5496172 ~ 5496763 (+) True XLOC_009658
TCONS_00021681 lncRNA downstream 787546 5499274 ~ 5502699 (+) True XLOC_009659
TCONS_00021880 lncRNA downstream 1683575 6395303 ~ 6421449 (+) False XLOC_009668
TCONS_00021881 lncRNA downstream 1683576 6395304 ~ 6412819 (+) False XLOC_009668
TCONS_00021882 lncRNA downstream 1689863 6401591 ~ 6412819 (+) True XLOC_009668
TCONS_00019347 mRNA upstream 1067 4695075 ~ 4707668 (+) False XLOC_009649
TCONS_00019346 mRNA upstream 22490 4658250 ~ 4686245 (+) True XLOC_009648
TCONS_00019345 mRNA upstream 22805 4654333 ~ 4685930 (+) False XLOC_009648
TCONS_00019344 mRNA upstream 167821 4531730 ~ 4540914 (+) True XLOC_009646
TCONS_00019342 mRNA upstream 195940 4497302 ~ 4512795 (+) False XLOC_009645
TCONS_00019350 mRNA downstream 14101 4725829 ~ 4739346 (+) False XLOC_009651
TCONS_00019351 mRNA downstream 14101 4725829 ~ 4746492 (+) False XLOC_009651
TCONS_00019352 mRNA downstream 14120 4725848 ~ 4735283 (+) True XLOC_009651
TCONS_00019353 mRNA downstream 58538 4770266 ~ 4796565 (+) False XLOC_009652
TCONS_00019356 mRNA downstream 127080 4838808 ~ 4895521 (+) False XLOC_009653
TCONS_00019348 other upstream 1435 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019326 other upstream 1355118 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019314 other upstream 1979246 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 2424561 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 2967677 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019354 other downstream 58651 4770379 ~ 4779952 (+) False XLOC_009652
TCONS_00019355 other downstream 62405 4774133 ~ 4776956 (+) True XLOC_009652
TCONS_00019358 other downstream 162636 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019362 other downstream 472674 5184402 ~ 5231397 (+) False XLOC_009657
TCONS_00019367 other downstream 564948 5276676 ~ 5446774 (+) False XLOC_009658

Expression Profile

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