RNA id: TCONS_00019354


Basic Information

Item Value
RNA id TCONS_00019354
length 751
RNA type processed_transcript
GC content 0.52
exon number 6
gene id XLOC_009652
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4770266 ~ 4796565 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTAGAATCGATGAATCCATAGCTTCTGTAAAGAAATACCAATGGAAGAGACTGCGAACACAGATGTCCTCTTTATTGAGCTCAGACAGAAGCTGCAAAGCGGCCTTTTGTTCATTCGCAGTGACGTCATCGGTGGTGGTGCAGATGTGAAGATCGAATCCAAACCAGACTCCATCCTGAACGTCCAGACTCCTGACAGCAGCTTTCAGGTGACCCTCACACCTGGAGTCAGTCTGGTGGAGACGCAGAAGCAGAAAAGCCCAGCAAACTCTGAACAAGGCTCCCATTACAGACTACGTCTAAAAGTGGAGCAGCCAACAGAATCTCCTTGCAGTGTGATTGGCCAGCTGAGAGTCGATGAGAGTTACTCCGTACTGTGCCAATCCTGTGGCTCCAGAGTGCTCCAACACAGgtCTTTTGGACGAGTTCTTCCTTTGCCCAATGGAAACTGGAATGCATTAGTGGACGACTGGTGCTGCCATCCAGATCCCTTCGCCAACAGAAAACTGCTGCCGCGAGCTGGAGACTGCCTGCTGGGGGACACCTTCATTCTGCTGCTGCGGGACGACGGCTGCGATGAGAGTCTGACACGGGCCGCTGCAGAGAAGCGTGTGCTGGTGTCCTGCAGGAGGTGCTCCACTGCGCTGGGAGAGGAGATCACTGCGgGGGCTTTCATCTTCAGGAAGCTACACGAACAACAACTGCTTCTCCTTTAGACAATATAATAAATCTTTGTGTAATGAATTGACA

Function

GO:

id name namespace
GO:0051865 protein autoubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0005829 cytosol cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0030332 cyclin binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-091218-3 Predicted to enable cyclin binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human UBE3D (ubiquitin protein ligase E3D).

Ensembl:

ensembl_id ENSDART00000150108

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021878 lncRNA upstream 58651 4708735 ~ 4711728 (+) False XLOC_009650
TCONS_00021879 lncRNA upstream 58651 4708822 ~ 4711728 (+) True XLOC_009650
TCONS_00019349 lncRNA upstream 62711 4706841 ~ 4707668 (+) True XLOC_009649
TCONS_00021877 lncRNA upstream 210467 4559111 ~ 4559912 (+) True XLOC_009647
TCONS_00021876 lncRNA upstream 343085 4422621 ~ 4427294 (+) True XLOC_009644
TCONS_00019372 lncRNA downstream 716220 5496172 ~ 5496763 (+) True XLOC_009658
TCONS_00021681 lncRNA downstream 719322 5499274 ~ 5502699 (+) True XLOC_009659
TCONS_00021880 lncRNA downstream 1615351 6395303 ~ 6421449 (+) False XLOC_009668
TCONS_00021881 lncRNA downstream 1615352 6395304 ~ 6412819 (+) False XLOC_009668
TCONS_00021882 lncRNA downstream 1621639 6401591 ~ 6412819 (+) True XLOC_009668
TCONS_00019351 mRNA upstream 23887 4725829 ~ 4746492 (+) False XLOC_009651
TCONS_00019350 mRNA upstream 31033 4725829 ~ 4739346 (+) False XLOC_009651
TCONS_00019352 mRNA upstream 35096 4725848 ~ 4735283 (+) True XLOC_009651
TCONS_00019347 mRNA upstream 62711 4695075 ~ 4707668 (+) False XLOC_009649
TCONS_00019346 mRNA upstream 84134 4658250 ~ 4686245 (+) True XLOC_009648
TCONS_00019356 mRNA downstream 58856 4838808 ~ 4895521 (+) False XLOC_009653
TCONS_00019357 mRNA downstream 59126 4839078 ~ 4866388 (+) True XLOC_009653
TCONS_00019359 mRNA downstream 127738 4907690 ~ 4913970 (+) True XLOC_009655
TCONS_00019360 mRNA downstream 376468 5156420 ~ 5167280 (+) True XLOC_009656
TCONS_00019361 mRNA downstream 404450 5184402 ~ 5199333 (+) False XLOC_009657
TCONS_00019348 other upstream 63079 4697813 ~ 4707300 (+) False XLOC_009649
TCONS_00019326 other upstream 1416762 3353501 ~ 3353617 (+) True XLOC_009631
TCONS_00019314 other upstream 2040890 2729373 ~ 2729489 (+) True XLOC_009620
TCONS_00019309 other upstream 2486205 2284056 ~ 2284174 (+) True XLOC_009616
TCONS_00019306 other upstream 3029321 1740937 ~ 1741058 (+) True XLOC_009612
TCONS_00019358 other downstream 94412 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019362 other downstream 404450 5184402 ~ 5231397 (+) False XLOC_009657
TCONS_00019367 other downstream 496724 5276676 ~ 5446774 (+) False XLOC_009658
TCONS_00019368 other downstream 602430 5382382 ~ 5440055 (+) False XLOC_009658
TCONS_00019369 other downstream 628699 5408651 ~ 5436774 (+) False XLOC_009658

Expression Profile

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