Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019367 |
| length | 698 |
| RNA type | processed_transcript |
| GC content | 0.51 |
| exon number | 7 |
| gene id | XLOC_009658 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 5251768 ~ 5497474 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045104 | intermediate filament cytoskeleton organization | biological_process |
| GO:0007519 | skeletal muscle tissue development | biological_process |
| GO:0031581 | hemidesmosome assembly | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0007626 | locomotory behavior | biological_process |
| GO:0042060 | wound healing | biological_process |
| GO:0042383 | sarcolemma | cellular_component |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005882 | intermediate filament | cellular_component |
| GO:0005925 | focal adhesion | cellular_component |
| GO:0030056 | hemidesmosome | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0030506 | ankyrin binding | molecular_function |
| GO:0005198 | structural molecule activity | molecular_function |
| GO:0005200 | structural constituent of cytoskeleton | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| GO:0008307 | structural constituent of muscle | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-100917-2 | Predicted to enable ankyrin binding activity and structural molecule activity. Predicted to be a structural constituent of cytoskeleton and structural constituent of muscle. Acts upstream of or within locomotory behavior; myofibril assembly; and skeletal muscle tissue development. Predicted to be located in cytoskeleton. Predicted to be active in several cellular components, including focal adhesion; hemidesmosome; and sarcolemma. Predicted to colocalize with intermediate filament. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2Q; epidermolysis bullosa simplex; epidermolysis bullosa simplex Ogna type; and epidermolysis bullosa simplex with muscular dystrophy. Orthologous to human PLEC (plectin). |
| ensembl_id | ENSDART00000133972 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021878 | lncRNA | upstream | 564948 | 4708735 ~ 4711728 (+) | False | XLOC_009650 |
| TCONS_00021879 | lncRNA | upstream | 564948 | 4708822 ~ 4711728 (+) | True | XLOC_009650 |
| TCONS_00019349 | lncRNA | upstream | 569008 | 4706841 ~ 4707668 (+) | True | XLOC_009649 |
| TCONS_00021877 | lncRNA | upstream | 716764 | 4559111 ~ 4559912 (+) | True | XLOC_009647 |
| TCONS_00021876 | lncRNA | upstream | 849382 | 4422621 ~ 4427294 (+) | True | XLOC_009644 |
| TCONS_00019372 | lncRNA | downstream | 49398 | 5496172 ~ 5496763 (+) | True | XLOC_009658 |
| TCONS_00021681 | lncRNA | downstream | 52500 | 5499274 ~ 5502699 (+) | True | XLOC_009659 |
| TCONS_00021880 | lncRNA | downstream | 948529 | 6395303 ~ 6421449 (+) | False | XLOC_009668 |
| TCONS_00021881 | lncRNA | downstream | 948530 | 6395304 ~ 6412819 (+) | False | XLOC_009668 |
| TCONS_00021882 | lncRNA | downstream | 954817 | 6401591 ~ 6412819 (+) | True | XLOC_009668 |
| TCONS_00019364 | mRNA | upstream | 45279 | 5202042 ~ 5231397 (+) | True | XLOC_009657 |
| TCONS_00019363 | mRNA | upstream | 46065 | 5196226 ~ 5230611 (+) | False | XLOC_009657 |
| TCONS_00019361 | mRNA | upstream | 77343 | 5184402 ~ 5199333 (+) | False | XLOC_009657 |
| TCONS_00019360 | mRNA | upstream | 109396 | 5156420 ~ 5167280 (+) | True | XLOC_009656 |
| TCONS_00019359 | mRNA | upstream | 362706 | 4907690 ~ 4913970 (+) | True | XLOC_009655 |
| TCONS_00019373 | mRNA | downstream | 92415 | 5539189 ~ 5544738 (+) | True | XLOC_009660 |
| TCONS_00019374 | mRNA | downstream | 132970 | 5579744 ~ 5582764 (+) | True | XLOC_009661 |
| TCONS_00019375 | mRNA | downstream | 150826 | 5597600 ~ 5605341 (+) | True | XLOC_009662 |
| TCONS_00019376 | mRNA | downstream | 165773 | 5612547 ~ 5636375 (+) | False | XLOC_009663 |
| TCONS_00019377 | mRNA | downstream | 165885 | 5612659 ~ 5636376 (+) | True | XLOC_009663 |
| TCONS_00019362 | other | upstream | 45279 | 5184402 ~ 5231397 (+) | False | XLOC_009657 |
| TCONS_00019358 | other | upstream | 402195 | 4874364 ~ 4874481 (+) | True | XLOC_009654 |
| TCONS_00019354 | other | upstream | 496724 | 4770379 ~ 4779952 (+) | False | XLOC_009652 |
| TCONS_00019355 | other | upstream | 499720 | 4774133 ~ 4776956 (+) | True | XLOC_009652 |
| TCONS_00019348 | other | upstream | 569376 | 4697813 ~ 4707300 (+) | False | XLOC_009649 |
| TCONS_00019392 | other | downstream | 1283732 | 6730506 ~ 6733636 (+) | False | XLOC_009670 |
| TCONS_00019438 | other | downstream | 3790358 | 9237132 ~ 9237246 (+) | True | XLOC_009699 |
| TCONS_00019442 | other | downstream | 4079333 | 9526107 ~ 9527209 (+) | False | XLOC_009704 |
| TCONS_00019443 | other | downstream | 4093259 | 9540033 ~ 9558103 (+) | True | XLOC_009705 |
| TCONS_00019455 | other | downstream | 4837484 | 10284258 ~ 10292937 (+) | True | XLOC_009713 |
