RNA id: TCONS_00019377



Basic Information


Item Value
RNA id TCONS_00019377
length 1254
RNA type mRNA
GC content 0.50
exon number 12
gene id XLOC_009663
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5612547 ~ 5636376 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGACATTCGATTCCGAGACATATATGCCTAAAAGCAAAGCCCCCAAGATGGATGATCTGGACTACATCCCAGCGGACCTAAGCCCAGAGGAGCGCTCCGAGCTGGAGGAGATCCGGCGCAGGAAAGGTGCTCTGCTGCTGGAGATCCAGAGGCTGAAGGAGGAGCTGAGAGAAGCTATCATTGAGGTTGAGGGACTGGAGACCAGCACTGAGGGCAGTAAAACATTACAAAAGAGTCGACATGTGGCCATGGGCAGGAAAAAATTCAACATGGATCCGAAAAAGGGCATTGTGTTCCTAGTGGAGAACGAGCTTCTCAGACACACTCCAGAGGACATTGCTCAGTTTCTGTACAAAGGAGAAGGACTTAATAAAACTGCAATAGGAGACTATCTGGGTGAAAGAGATGACTTCAATATTAAGGTATTGCAGGCATTTGTGGATCTTCACGAGTTCACAGATCTGAACTTGGTACAAGCACTTCGGCAGTTTCTGTGGAGTTTCCGCTTGCCAGGCGAAGCTCAAAAAATCGACAGGATGATGGAGGCCTTCGCACAGAGATACTGTCACTGCAATCCTGGAGTCTTCCAGAgcacagACACCTGTTACGTGCTGTCATTTGCCATCATCATGCTGAACACCAGTCTGCACAACCCCAACGTGCGGGACAAGCCCACGGTGGAACGCTTCATCAGCATGAACAGAGGCATCAATGATGGCGGAGATTTACCAGAGGAGCTGCTCAGAAATCTGTATGATAGCATTAAGAACGAGCCCTTTAAGATCCCGGAGGATGATGGGAATGACCTGACGCACACATTCTTCAACCCGGACAGAGAAGGCTGGCTCCTCAAGCTGGCAGGAGGTCGAGTAAAAACATGGAAGAGACGATGGTTCATTCTGACAGACAACTGCCTCTATTACTTTGAGTACACAACGgatAAGGAGCCCAGAGGCATCATTCCACTGGAGAATCTGAGCATTCGTGAGGTTGAAGACCCGAGAAAGCCAAACTGCTTTGAGCTCTACATCCCGAATAACCGCGGTCAGCTGATTAAAGCCTGTAAGACGGAGGCTGATGGTCGAGTGGTGGAGGGAAACCACATGGTGTACCGGATCTCTGCTCCCACCCCAGAGGAGAAGGACGAGTGGATACACAGCATCAAATCTGCTGTGAGTGTTGATCCTTTCTACGAGATGCTAGCTGCCAGAAAGAAGCGCATTTCCCTAAAGAAAAAGGAAGAGCAACCCTAA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000189352

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00021681 lncRNA upstream 109960 5499274 ~ 5502699 (+) True XLOC_009659
TCONS_00019372 lncRNA upstream 115896 5496172 ~ 5496763 (+) True XLOC_009658
TCONS_00021878 lncRNA upstream 900931 4708735 ~ 4711728 (+) False XLOC_009650
TCONS_00021879 lncRNA upstream 900931 4708822 ~ 4711728 (+) True XLOC_009650
TCONS_00019349 lncRNA upstream 904991 4706841 ~ 4707668 (+) True XLOC_009649
TCONS_00021880 lncRNA downstream 758927 6395303 ~ 6421449 (+) False XLOC_009668
TCONS_00021881 lncRNA downstream 758928 6395304 ~ 6412819 (+) False XLOC_009668
TCONS_00021882 lncRNA downstream 765215 6401591 ~ 6412819 (+) True XLOC_009668
TCONS_00021682 lncRNA downstream 1114371 6750747 ~ 6757298 (+) False XLOC_009671
TCONS_00019401 lncRNA downstream 1308191 6944567 ~ 6947921 (+) True XLOC_009673
TCONS_00019375 mRNA upstream 7318 5597600 ~ 5605341 (+) True XLOC_009662
TCONS_00019374 mRNA upstream 29895 5579744 ~ 5582764 (+) True XLOC_009661
TCONS_00019373 mRNA upstream 67921 5539189 ~ 5544738 (+) True XLOC_009660
TCONS_00019371 mRNA upstream 119944 5408748 ~ 5492715 (+) False XLOC_009658
TCONS_00019378 mRNA downstream 41695 5678071 ~ 5710821 (+) False XLOC_009664
TCONS_00019379 mRNA downstream 41696 5678072 ~ 5691238 (+) False XLOC_009664
TCONS_00019380 mRNA downstream 41763 5678139 ~ 5700393 (+) False XLOC_009664
TCONS_00019381 mRNA downstream 66373 5702749 ~ 5705846 (+) True XLOC_009664
TCONS_00019382 mRNA downstream 138601 5774977 ~ 5779201 (+) True XLOC_009665
TCONS_00019367 other upstream 165885 5276676 ~ 5446774 (+) False XLOC_009658
TCONS_00019368 other upstream 172604 5382382 ~ 5440055 (+) False XLOC_009658
TCONS_00019369 other upstream 175885 5408651 ~ 5436774 (+) False XLOC_009658
TCONS_00019362 other upstream 381262 5184402 ~ 5231397 (+) False XLOC_009657
TCONS_00019358 other upstream 738178 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019392 other downstream 1094130 6730506 ~ 6733636 (+) False XLOC_009670
TCONS_00019438 other downstream 3600756 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019442 other downstream 3889731 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019443 other downstream 3903657 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019455 other downstream 4647882 10284258 ~ 10292937 (+) True XLOC_009713

Expression Profile


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