RNA id: TCONS_00019385


Basic Information

Item Value
RNA id TCONS_00019385
length 2835
RNA type mRNA
GC content 0.49
exon number 27
gene id XLOC_009666
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5898878 ~ 6182429 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAAATAGATGGAGAACTTTATTTTGTATGAAGAGATCGGGAGAGGCAGCAGATCAGTTGTTTATAAGGGCAGGAGGAAAGGCAGCATTCATTTCGTGGCCATCATCTGCAGTGAAAAACACAAGAGACCCGAATTAACAAACCATGTGAGACTGGCTCATGACATCAAACATGACAATGTGGTGGCTTTCTATGAATGGTACGAGACTAGCAACCATCTGTGGATGGTGGTGGAGATGTGCACAGgtgGATCCTTGGCAGCTCTGATCGCTCAAGATGAGTGCTTGTCTGAGTATGTAGTGAGAGAGTTTTCCATTGACTTGGTTAAAGGTCTTAAATACATCCACGACTCTGGAATTATTGTTTCAGATCTCACACCTGCAAAGattttattgGATGGACCGGGAACTCTTAAGTACTCCAATTTCTGCCTGGCCAAAGCTCAAGGAGAAAGTTCTCCTGTGTATTGTTCTCCTGAGGTGTTGAGAGGATCAGAAACCAATGTCGACAGTGACCTGTGGGCTTTAGGCTGTGTTCTGTATGAGATGTTCACAGGAAAACCTCCCTTTGTATCTGAGAGTATGACTGGTCTAGTTGATCTCATTTTAAATGAAGATCCTCCACCTTTAAGACCTAAAGAACCGGCTTCCTCACAGCCCAGCCCAGATTTTGAGAACCTGGTAATGGGTTTACTTCAGAAAGATCCTGTTTTAAGGTTAAGCTGGGATCCTCTGTTATCTCACCCGTTCTGGAGGGATGCATTTTTAGAGGCTCACAACTCCAAAGGAGAACCACAGGATGACGTCTCATCGATATCTAGtctaCATTTGGCCCCTGTAGCTCCTCAGACAGCAGAGGAAGCGCAGACAGCCCCTGCTGACCCTGCCAGCCCAAACAGCAAGTCCTTCACATTAGatAACGTGATTGAGTTTAGACCAAAGTCTGCGCTGGACATTGATGCCAGAGAGGCCATTTTCCTCCTCAGCTCTAGACCAACTCCCAGAACAAGCACGGCTCGAGAAACAGAGGACAGTCGAGCAGAAATTCATGAGTCCAGCGTTATGGCAGAGGAACAGAGTGACCTGAACACATGCATTAAATCGCTTTTATACACCGACTGTGACCTCACAGTGACTCCCATCATGGATAACCCAAAGattttaaagacTGCTCCAGTTCGTTTTGACCCCAAAACACTTTGTGTACCAGCACACTCAGTTTCCTGTGCTGGTTCAACAAATGCGACAGGCTCCAAACTGGGATATAAGAAGCAAAGTGATGAGAGCGATCGGCCTGCTGGCGTCCCACTGCACGGAGCTCAGAGACCACGCTCCTGTCTCAGAGGTGAGAACTcagttttttttttaaatatctgtgtgtttttgctttgttcTTCAGGCGGTGGCCATGTTTACAGAACTGATCCGGGAGAACTTCAGGAGCAGCAAATTGAAGCAATGCTTGATTCCACCAATGGGGGAGCTGCTTTATCTCATTGCTACACAGAGAAGAAAGAGCGCCCAGGAGGATTGTGGGTCGTTCCTGCTGCCGCCTACACCGTGTTAATGAGGTGCCTTCGGGAAGGGGAGGACTTGGTGGTGAACCACATGGCTGCCAAAACAATTGAGAACGTGTGCAGCCGAGAGTCTCAATCCGCTCAGGGATTCATCACTGCAGAGGTGGGACCTGCTCTCTGGTATCTGTTCACACACTCCACGGTGGATGCTCTGAGGGTCAGCGCTATATCTGTGAGTATTAAACACACCACATTCACATCATTCCAACACAAACGCAACACTCAAATGCATCAGTCCAGTTTCCGTTACGACTTTGTTATGAAGATAATCCGCTCTCTGGAGAGTCCGTCTTCAGTCATCCGCGCGAAGGCCTTCCTTGTTCTTCTGCAGGTCCTTATGAACAATAGAGAGATGCTTCTGCTCTGCTGTAACTCCAGGCTGGTGATGTACATTGAAAGAGACGTCCGAAAGGCCACGCCAGGAAAAGAGCAACAAAGCGGCAATGAATACCTGTCAAAATGCCTGACCCTCTTCATCCGTCACACCGTGCGCGAACTGCCAGCCATCCTGGATGACATCCTGTCCGTGTTAGGCAGTATTGTGGGACGGAAGCACCCCTCGCCCACACAGTCCCGTCAGCTGAAGCAGAGCCTCCCCATGATGGCTGTGGTGCTGCATCTGCTCAcctcacagATCTTCCGACCGCAGGTGGTGACTGAGGCCTTTCTCATCAAGTTTGGGAAACTCCTGAATCACATAACTTCCATTGACTCGAATGAGACGAGTTTGGGAAGTGCAATAGGCCAAGCGTCATCTGAGGAGCTGATCAGAAACACACTGTCAGCAGTGGAGGCCATTTCCCAGCATCCCGCTCTGCTCAGCCTCTACCCCTTCATTGTTGTGGATTTGATTGTGCCGCCGCTGGCATCTTTGGCCTTCAGTAAGAACGTGGAATGGCGTATTGTGAGTTTGCGTGTGCTGTCAGAGATCACACTGCTGCTGCTGAGCCAAGACGAGGTGGAGGAGCGCGAGAGAGCTGGAGAAGGAGAGCGAGAGTGGGAAGGTGAAGGGAACATCTCCTCCAACACTCGCCTGCTGACGCTCATCTCTGAGGCCCTGCTGCCACAGTATGAGACTCTTCTCCTGGAGCCTGATCCTGTACCAGTTTACGCTCTCAAGCTACTGGTGTCCCTCACTGAGCACAGCTCGCCAATCAGCAGGTGAACagcaacactcacacacacatagcagATGACACGGTGCTCAAACCTCGGATTTAATCCTATAGAAACACACTTCAGGATGGCCTTCATTTGAC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-100922-243 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human ULK4 (unc-51 like kinase 4).

Ensembl:

ensembl_id ENSDART00000143540

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021681 lncRNA upstream 399597 5499274 ~ 5502699 (+) True XLOC_009659
TCONS_00019372 lncRNA upstream 405533 5496172 ~ 5496763 (+) True XLOC_009658
TCONS_00021878 lncRNA upstream 1190568 4708735 ~ 4711728 (+) False XLOC_009650
TCONS_00021879 lncRNA upstream 1190568 4708822 ~ 4711728 (+) True XLOC_009650
TCONS_00019349 lncRNA upstream 1194628 4706841 ~ 4707668 (+) True XLOC_009649
TCONS_00021880 lncRNA downstream 343792 6395303 ~ 6421449 (+) False XLOC_009668
TCONS_00021881 lncRNA downstream 343793 6395304 ~ 6412819 (+) False XLOC_009668
TCONS_00021882 lncRNA downstream 350080 6401591 ~ 6412819 (+) True XLOC_009668
TCONS_00021682 lncRNA downstream 699236 6750747 ~ 6757298 (+) False XLOC_009671
TCONS_00019401 lncRNA downstream 893056 6944567 ~ 6947921 (+) True XLOC_009673
TCONS_00019382 mRNA upstream 123095 5774977 ~ 5779201 (+) True XLOC_009665
TCONS_00019378 mRNA upstream 191475 5678071 ~ 5710821 (+) False XLOC_009664
TCONS_00019389 mRNA downstream 285441 6336952 ~ 6347186 (+) True XLOC_009667
TCONS_00019390 mRNA downstream 581458 6632969 ~ 6654587 (+) True XLOC_009669
TCONS_00019391 mRNA downstream 675684 6727195 ~ 6746242 (+) False XLOC_009670
TCONS_00019393 mRNA downstream 683504 6735015 ~ 6746242 (+) False XLOC_009670
TCONS_00019394 mRNA downstream 687391 6738902 ~ 6747274 (+) True XLOC_009670
TCONS_00019367 other upstream 455522 5276676 ~ 5446774 (+) False XLOC_009658
TCONS_00019368 other upstream 462241 5382382 ~ 5440055 (+) False XLOC_009658
TCONS_00019369 other upstream 465522 5408651 ~ 5436774 (+) False XLOC_009658
TCONS_00019362 other upstream 670899 5184402 ~ 5231397 (+) False XLOC_009657
TCONS_00019358 other upstream 1027815 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019392 other downstream 678995 6730506 ~ 6733636 (+) False XLOC_009670
TCONS_00019438 other downstream 3185621 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019442 other downstream 3474596 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019443 other downstream 3488522 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019455 other downstream 4232747 10284258 ~ 10292937 (+) True XLOC_009713

Expression Profile

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