RNA id: TCONS_00019387


Basic Information

Item Value
RNA id TCONS_00019387
length 547
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_009666
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5898878 ~ 6182429 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTTCTCAGCTCTCCATCCAAAGCACTTCAAATCCAGTAAAAGCCAAGTGAAATTAGCCTTTACATCTCCATCTCGGCCTTATCAAATACAAAGAGGAAAGACATCTCGTCCAAGCAGgtGTACAACTTCACtacttaggatcatgagcagttcctttccttctctAAACTCTTCTCTTTCCAACACTCTGGCGGTGGCCATGTTTACAGAACTGATCCGGGAGAACTTCAGGAGCAGCAAATTGAAGCAATGCTTGATTCCACCAATGGGGGAGCTGCTTTATCTCATTGCTACACAGGAAGAGAAGAAAGAGCGCCCAGGAGGATTGTGGGTCGTTCCTGCTGCCGCCTACACCGTGTTAATGAGGTGCCTTCGGGAAGGGGAGGACTTGGTGGTGAACCACATGGCTGCCAAAACAATTGAGAACGTGTGCAGCCGAGAGTCTCAATCCGCTCAGGGATTCATCACTGCAGAGGTGGGACCTGCTCTCTGGTATCTGTTCACACACTCCACGGTGGATGCTCTGAGGGTCAGCGCTATATCTG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-100922-243 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human ULK4 (unc-51 like kinase 4).

Ensembl:

ensembl_id ENSDART00000162229

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021681 lncRNA upstream 423821 5499274 ~ 5502699 (+) True XLOC_009659
TCONS_00019372 lncRNA upstream 429757 5496172 ~ 5496763 (+) True XLOC_009658
TCONS_00021878 lncRNA upstream 1214792 4708735 ~ 4711728 (+) False XLOC_009650
TCONS_00021879 lncRNA upstream 1214792 4708822 ~ 4711728 (+) True XLOC_009650
TCONS_00019349 lncRNA upstream 1218852 4706841 ~ 4707668 (+) True XLOC_009649
TCONS_00021880 lncRNA downstream 415009 6395303 ~ 6421449 (+) False XLOC_009668
TCONS_00021881 lncRNA downstream 415010 6395304 ~ 6412819 (+) False XLOC_009668
TCONS_00021882 lncRNA downstream 421297 6401591 ~ 6412819 (+) True XLOC_009668
TCONS_00021682 lncRNA downstream 770453 6750747 ~ 6757298 (+) False XLOC_009671
TCONS_00019401 lncRNA downstream 964273 6944567 ~ 6947921 (+) True XLOC_009673
TCONS_00019386 mRNA upstream 4701 5908483 ~ 5921819 (+) False XLOC_009666
TCONS_00019382 mRNA upstream 147319 5774977 ~ 5779201 (+) True XLOC_009665
TCONS_00019378 mRNA upstream 215699 5678071 ~ 5710821 (+) False XLOC_009664
TCONS_00019388 mRNA downstream 41614 6021908 ~ 6101526 (+) True XLOC_009666
TCONS_00019389 mRNA downstream 356658 6336952 ~ 6347186 (+) True XLOC_009667
TCONS_00019390 mRNA downstream 652675 6632969 ~ 6654587 (+) True XLOC_009669
TCONS_00019391 mRNA downstream 746901 6727195 ~ 6746242 (+) False XLOC_009670
TCONS_00019393 mRNA downstream 754721 6735015 ~ 6746242 (+) False XLOC_009670
TCONS_00019367 other upstream 479746 5276676 ~ 5446774 (+) False XLOC_009658
TCONS_00019368 other upstream 486465 5382382 ~ 5440055 (+) False XLOC_009658
TCONS_00019369 other upstream 489746 5408651 ~ 5436774 (+) False XLOC_009658
TCONS_00019362 other upstream 695123 5184402 ~ 5231397 (+) False XLOC_009657
TCONS_00019358 other upstream 1052039 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019392 other downstream 750212 6730506 ~ 6733636 (+) False XLOC_009670
TCONS_00019438 other downstream 3256838 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019442 other downstream 3545813 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019443 other downstream 3559739 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019455 other downstream 4303964 10284258 ~ 10292937 (+) True XLOC_009713

Expression Profile

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