RNA id: TCONS_00021880


Basic Information

Item Value
RNA id TCONS_00021880
length 801
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_009668
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6395303 ~ 6421449 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCATTTTAAAAActgtaacatttatttaagtATCACCATCCACAACACATATAATTCTAATTCCATTCTTCGTCAGTTAATATTGCAGCAGTactactttcattcatttttcacaGCAGTTACGCATTGCATACTCACAACAGACGTCTTTACACCACAAAACTAAGTTACTGTCTGCACATTAATATTCAGTTCTATAAAAACCTCACTCAACTCTCAGCATCAGTACCACAActacatccaaaataaattagcaaacgaCGTACAATTAAGGATACCTCCTTCTCTAGCATACAGTGTTAAACTAGTTAAAAGACGCTTAAAATGGGCAGCGTTCATTTTCCTTAGGAAATCTTGCAAATAGCTGCCTTGTTAGGACTTAATCTCAAACTGTGCGTTCCCTTATTTGTTCTCATGAAATCATTGCTTATGTGTGTGTCTTTTCAATGGAGTGCATCCCTAGTGAGGtttagtctgtgtgtgtttgtgaactgCCTGTAAGCAAGCGGAGGCCcagctttttttttgtgttcacacAAAGTAGCCTTTGTCCGTCAATGTCGTTGCTCTCTCAGTTTGCACAAAGGCGAccccgcgcgcacacacacacacacacgcataaacacacaaacgcacacactctTCAGTCCTCCTTCACATTGTTGTTGGAATGCAGGTCATGGTTTTCAGGCTTGAAGCTCTTGGGTTTGCCGGGCAGGAGGATCATAGCCAGAATGCTGATGACATGCACATGAAAGTACATCGATCTAAAGGAACAGAGAACATACCAAAAGTATCTG

Function

GO:

id name namespace
GO:0006082 organic acid metabolic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021681 lncRNA upstream 892604 5499274 ~ 5502699 (+) True XLOC_009659
TCONS_00019372 lncRNA upstream 898540 5496172 ~ 5496763 (+) True XLOC_009658
TCONS_00021878 lncRNA upstream 1683575 4708735 ~ 4711728 (+) False XLOC_009650
TCONS_00021879 lncRNA upstream 1683575 4708822 ~ 4711728 (+) True XLOC_009650
TCONS_00019349 lncRNA upstream 1687635 4706841 ~ 4707668 (+) True XLOC_009649
TCONS_00021682 lncRNA downstream 329298 6750747 ~ 6757298 (+) False XLOC_009671
TCONS_00019401 lncRNA downstream 523118 6944567 ~ 6947921 (+) True XLOC_009673
TCONS_00021883 lncRNA downstream 696698 7118147 ~ 7118568 (+) True XLOC_009675
TCONS_00019407 lncRNA downstream 805227 7226676 ~ 7232180 (+) True XLOC_009677
TCONS_00019408 lncRNA downstream 806135 7227584 ~ 7294953 (+) True XLOC_009678
TCONS_00019389 mRNA upstream 48117 6336952 ~ 6347186 (+) True XLOC_009667
TCONS_00019383 mRNA upstream 212874 5898878 ~ 6182429 (+) False XLOC_009666
TCONS_00019384 mRNA upstream 212874 5901835 ~ 6182429 (+) False XLOC_009666
TCONS_00019388 mRNA upstream 293777 6021908 ~ 6101526 (+) True XLOC_009666
TCONS_00019385 mRNA upstream 343792 5902296 ~ 6051511 (+) False XLOC_009666
TCONS_00019390 mRNA downstream 211520 6632969 ~ 6654587 (+) True XLOC_009669
TCONS_00019391 mRNA downstream 305746 6727195 ~ 6746242 (+) False XLOC_009670
TCONS_00019393 mRNA downstream 313566 6735015 ~ 6746242 (+) False XLOC_009670
TCONS_00019394 mRNA downstream 317453 6738902 ~ 6747274 (+) True XLOC_009670
TCONS_00019395 mRNA downstream 328840 6750289 ~ 6800118 (+) False XLOC_009671
TCONS_00019367 other upstream 948529 5276676 ~ 5446774 (+) False XLOC_009658
TCONS_00019368 other upstream 955248 5382382 ~ 5440055 (+) False XLOC_009658
TCONS_00019369 other upstream 958529 5408651 ~ 5436774 (+) False XLOC_009658
TCONS_00019362 other upstream 1163906 5184402 ~ 5231397 (+) False XLOC_009657
TCONS_00019358 other upstream 1520822 4874364 ~ 4874481 (+) True XLOC_009654
TCONS_00019392 other downstream 309057 6730506 ~ 6733636 (+) False XLOC_009670
TCONS_00019438 other downstream 2815683 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019442 other downstream 3104658 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019443 other downstream 3118584 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019455 other downstream 3862809 10284258 ~ 10292937 (+) True XLOC_009713

Expression Profile

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