RNA id: CI01000258_00137907_00154325.mRNA


Basic Information

Item Value
RNA id CI01000258_00137907_00154325.mRNA
length 3770
RNA type mRNA
GC content 0.43
exon number 8
gene id CI01000258_00137907_00154325
representative False

Chromosome Information

Item Value
chromosome id CI01000258
NCBI id null
chromosome length 191677
location 135746 ~ 154356 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCAAAAGGGGCTGAATTACTGCATGTTCACAGTAATCAGGCACAACCCCTGAAAGCAAACTCTTATTAATTATAGACAGTAAAAATGGGCCAACTGATTCGAAAACTTGCTTTAACAAATGGGTCGGAACAATATCTTGAGGAGAACTTGTAGTCTTTAGTTTATGCACAATGTCCTCAAGGAGAGAAAGAGAGATCGGCTCAAAAATCGGAGAAAGATGGTAGGCAACAAGAACAGTCCTCCCTAGGCTAGACCGTCCCATTTAACAACGCTCAGTCCGACCTTGCCGTCCTTCGAAAGCGATGCAGGATGCAGCCTCTGAATTGGGACACAGCTTTCATATGCACTTGTGGTCTTGTGGACTTACAATGGCCACTGTGTGCGCATGTCCGTTAAGTCCACAAGACCATAGCGTGTCCTATCCCAAATGGCACCCTAAACACTCATGGTCTTCCTACGAGTCCTCACTTTTGTGATGTAATGCCGCTTTGACTGTCAGGAATATTTCTTCTGCGGAGATCGCACCAGTGCAGGCTTGGCAAAAGTGCGCATCGAGGGCACGTTTTGCCGAGCCTGCAAGCCCACAAGCTCTACAGCAGACTTCTACCCAACAGTTAAAGCGGCTTTACGTCACAAAAGTCTGGACTCGGAGGAAGATCGCAAGGGCTTAGGCTTCTATTTGGGACAGGGCCAGGAGAGGATTTGTGAATGGAAGTAAAGCGACGCAACTGACACTGGTAGGTCACATGACAGACACTGACAACATGGCGGATATAGTACGTCCGAATTTCATTCATACATATTCATATAGGCTATATTATATAAAGCATACATTTTAAGGGTTGTGAAGTAAATTCAAATTCAAATGTAGTATCCACTCAGTACGCGATTTCGGACAGCTCCCTGCCCTGGTTTTCACAGTGCATTGTGGAACTTTTTAGGGAGAAATTGTTTCAGTGCACTGGAAGGATTTTGCGATTGATACAGCTCTTCAAATAGCAGACTCTCTGATTCCTGTCCTGACTTTATTGAGATGCACCTAGAGACTCAAGTACTAATAATAACCCTAACTAACTGTTGATATTTTATTTCTACTATTGTTGTATTTTTTCTTATATTTAAAAATCCTGTGATTATTAATATTATTAATATTATTACTATACGTAGACAATATGAACTCTTTTTTCATGCATTTGCATGAGATCTGAATCTGAGAGGATCATCAGCGCACAGCGCCCCTGTTGTACGGTATTTCTGTCAGGACCACTATTGTCAAATATAATTGATAATTGCATAGAGTTTGTATTGGCGGTATGGTTCTGTTCTGCAAGAACTCCCTGTGCATCCATGCAACCTAGCATGGATAATAGCAGGGAGAGCCATTCTGTTCTGTTTACCCATCCTAGGGTAAACAGAACAGAACCAACTTATGCAGATATAATTAATGTCAATAATTTAGCATAAACATATTTCAAGAATTAGTCTGATACAGGGGAATCATAGGTCAATCCTGACTGACGAGAGGAGGAGCTGGGGATGGAGCAGGGTAATTAGCTCCTGAGAAATGCGATAGCTGCTGATAATACTGAGGAGCTTATATATGGATGCTGTGATAGGCGTCGTATTCCTATAGGCAGACGGGAGTCACCTGGGAGTCAGCTGATGTGAGCTTGACTGATGTGACCTGACAGAACTGACGTTACGCTGGATATTAACCAGCTTTTTTATTAACTCTGTTTTTTTTTTCGGTATAATAGGCCACAAGAGAAATGTTAAGAAAATAAATTAAGACAGCTGTGTTATATACCGTCATCAGAACATGCAGATTTGATTAATGTAGCGTCAGATGTCAGAAGCTCGGTCCGTCTCTACTTTCACTTTCTGTGGTGAATGTTTTTGACTTCTTCAAATTTTGTGTACAAAATCATGGACATTTCGCGCGCGTTATTTCCAGTAATAATAAAATCAATCAAGTTATTGAAGATAAGAGTAAATAAACAAGACTGATCTCTTCCAATCAAAGTTTGACATGTCATTTCCTCATACAGAGAGGCTGTGCTAAAGTTAGGAAGTGTTTTGCTTTTCTTTTCACTAGTCCTACGTGTCAGATGTTCCGTGAAGACTCTCTATAGGCCTATTTTAATTTTTTCTGGCATTAAATGGCGCTTGAGGATGAGCTGTCGTGTCCCGTGTGCACTGAGCTCTTCAGTGATCCTGTGTTGTTGAGCTGTGGTCACAGTTTCTGCCGTCGGTGCATTAATGATCACTGGACCTCGAGTAGATCCAGAAACTGTCCCGTCTGTCGACAGGCATCACCGCAGCCACCGGTGTCCAATCTGAGCCTGAGGAACACCTGTGAGTCTTACCTGAGAGAGCAAAACACGAGGAAAGAGAGGGATGGAGGACAAGAGTGTCAGATACATGGAGAGAAAATTGAGCTGTTCTGTCAAACAGATGAACAGGCTATATGTGTAACATGTAAGCAAAACGAACACAGATTTCACAAAACACAAACGTTACAACAGGCTGTTCGACAACGAAAGGAGAAGCTGAAAGCAGCTCTTCGTCCAGCTGAGAAGACATTGTGGTCATTACAGAATGGTGCAGCACAAGACGCCAAGATCTCTAATTACAATCAGAATTACAACAGCATTATGAACAGAGCTAAATACACACTTCCAGAAGCAGAACTGAGTTCAGAAGCTCTTATTGATCTTACCAAACATCTGGGTAACTTGAAGTATCAAGTATGGGAGAAGATGAAGGACATCTGCCCTTACTACCCTGTGATCCTGAACCCAAACACAGCTCCACCAGACGTCTCTGTGTCAGATGACCTGACCTCTGTGACATCATGTGCGTACCGACAGGACGAGCCCAACCCTCTTCTTCTGCACAGGAACCGTATGGTGTTGGGGAGTGTGGGATACAGTTATGGTGTTCACTCATGGGATATTGATGTGGGAAACAGTCGCAGCTGGAGCCTTGGAGTGTGTCTTGGATCAGTGGAAAGATCTATTGTGCAAAGTTTGAACTCTGCAAATGGCTTCTGGGGTCTCAGACGTGATGGAGACTTGTACAAATTCCTGAACACTACAATTGCGTTCAAGATGAAGACTCATCCCCAAGTGGTGCGTGTGAAGCTAAAGGATTGTTTTGACAAAAAGGGAGGATGGTGGAGGAATGTGAGTTATTTTGATGCTGCTTGTAATTCCCTTTTTGCCTGTTTTCAAGTGCCCTTAGGGATTGAGCTCTTTCCATTCGTGATCCCAGAAAAGCGCTCCGGCCCACTGCGTATCATCCCAGCTAAAGTTACTCTGACAACTGAACATGTTGAACACATTGAACAGGAGATCTCTTTTCCAGAGAAACATTGTTTCTTACCGAAGAGAGAGGAGAAGGTCACTGCCTCTGAAACAAAATGTGATGAACCCATGAAGAATCTGCCCTCTGCCTTCAGTGATGCAACAGTGACCTCTGACCCCAGCAGGGTGAAGAAAGAGAGATCAGAATCTCCACAACCCAGTTGTTCATCTGTGATGAGTGACAGTTCTATGATGAATCCTCCTTTATTGAGTGGTGGACCAGAGACCTTTGACCCCAGTATCAGCAGGAGGAAGAGACCGAGATCAGAGTCCCCAGAACCCAGTGGTGCGTCTCTGAAGAGTAGCACATCCATGAATCGACCCCCTCTATTCAGTGATGGACCAGTGACCTCAAATCCTTCGTTAGTATAAACTTGTACTTAAATTACTGTTGTGAATAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459788 lncRNA upstream 13615 119312 ~ 122131 (+) True G400530
TU459843 lncRNA upstream 22706 111265 ~ 113040 (+) True G400561
TU459805 lncRNA upstream 72235 44785 ~ 63511 (+) True G400539
TU459816 lncRNA upstream 80482 54784 ~ 55264 (+) True G400544
TU459772 lncRNA upstream 92161 42603 ~ 42861 (+) False G400521
CI01000258_00096312_00110058.mRNA mRNA upstream 24589 96312 ~ 111157 (+) True CI01000258_00096312_00110058
CI01000258_00045044_00048458.mRNA mRNA upstream 87288 45044 ~ 48458 (+) False CI01000258_00045044_00048458
CI01000258_00042250_00044020.mRNA mRNA upstream 91309 42250 ~ 44437 (+) False CI01000258_00042250_00044020
CI01000258_00038193_00041078.mRNA mRNA upstream 94422 37596 ~ 41324 (+) False CI01000258_00038193_00041078
CI01000258_00028166_00032821.mRNA mRNA upstream 102125 27921 ~ 33621 (+) True CI01000258_00028166_00032821
TU459791 other upstream 44105 48089 ~ 91641 (+) True G400532
TU459790 other upstream 86694 48089 ~ 49052 (+) False G400532
TU459771 other upstream 91785 42603 ~ 42861 (+) False G400521
TU459770 other upstream 92520 41518 ~ 43226 (+) False G400521
TU459793 other downstream 2093 156449 ~ 158626 (+) True G400533

Expression Profile