RNA id: TCONS_00021682


Basic Information

Item Value
RNA id TCONS_00021682
length 480
lncRNA type sense_over
GC content 0.48
exon number 4
gene id XLOC_009671
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6750289 ~ 6800632 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACTACACCCGCTCTATAAACTGGAACTATGCCGCGGGGCCGACCACGAAAACAAAGGATTAAAGATGACAACGAAATCGATGGAGGTCAAGGAGCAAGTTCAGAGAGCCAGAAGCATGCCGAAAACAAATGTAATGTTTGCTCCCAGAATTTCCCTAGTGAGAGTCAACTTCAGAGACACCTGCGAGACCATGAAGTCAATGATAAGCCATATCGGTGTGACCAGTGTCCGGCGTCCTTTAACGTGGAGTATAACCTTGACCTTCATAAATCCACCCACACCACCAGTGAACTCAAATGCCCGGTATGCCAAAAGAAGTTCTCAAGAGTGGCTAGTCTGAAGGCTCATGTGATGATACACGAGAAAGAAGAGAATTTCCTGTGCTCTGAGTGTGGAGATGAGTTTATCCTGCAGAGTCAGCTTTCTGTGCATCTGGAAGAACACCGGCAGGAACTCAGTGGAGCCAAGTCGTACACCT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021880 lncRNA upstream 329298 6395303 ~ 6421449 (+) False XLOC_009668
TCONS_00021881 lncRNA upstream 337928 6395304 ~ 6412819 (+) False XLOC_009668
TCONS_00021882 lncRNA upstream 337928 6401591 ~ 6412819 (+) True XLOC_009668
TCONS_00021681 lncRNA upstream 1248048 5499274 ~ 5502699 (+) True XLOC_009659
TCONS_00019372 lncRNA upstream 1253984 5496172 ~ 5496763 (+) True XLOC_009658
TCONS_00019401 lncRNA downstream 187269 6944567 ~ 6947921 (+) True XLOC_009673
TCONS_00021883 lncRNA downstream 360849 7118147 ~ 7118568 (+) True XLOC_009675
TCONS_00019407 lncRNA downstream 469378 7226676 ~ 7232180 (+) True XLOC_009677
TCONS_00019408 lncRNA downstream 470286 7227584 ~ 7294953 (+) True XLOC_009678
TCONS_00021884 lncRNA downstream 757552 7514850 ~ 7515507 (+) True XLOC_009681
TCONS_00019394 mRNA upstream 3473 6738902 ~ 6747274 (+) True XLOC_009670
TCONS_00019391 mRNA upstream 4505 6727195 ~ 6746242 (+) False XLOC_009670
TCONS_00019393 mRNA upstream 4505 6735015 ~ 6746242 (+) False XLOC_009670
TCONS_00019390 mRNA upstream 96160 6632969 ~ 6654587 (+) True XLOC_009669
TCONS_00019389 mRNA upstream 403561 6336952 ~ 6347186 (+) True XLOC_009667
TCONS_00019397 mRNA downstream 106946 6864244 ~ 6932014 (+) False XLOC_009672
TCONS_00019398 mRNA downstream 107310 6864608 ~ 6933178 (+) True XLOC_009672
TCONS_00019399 mRNA downstream 187013 6944311 ~ 6951854 (+) False XLOC_009673
TCONS_00019400 mRNA downstream 187266 6944564 ~ 6955545 (+) False XLOC_009673
TCONS_00019403 mRNA downstream 200284 6957582 ~ 7062949 (+) False XLOC_009674
TCONS_00019392 other upstream 17111 6730506 ~ 6733636 (+) False XLOC_009670
TCONS_00019367 other upstream 1303973 5276676 ~ 5446774 (+) False XLOC_009658
TCONS_00019368 other upstream 1310692 5382382 ~ 5440055 (+) False XLOC_009658
TCONS_00019369 other upstream 1313973 5408651 ~ 5436774 (+) False XLOC_009658
TCONS_00019362 other upstream 1519350 5184402 ~ 5231397 (+) False XLOC_009657
TCONS_00019438 other downstream 2479834 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019442 other downstream 2768809 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019443 other downstream 2782735 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019455 other downstream 3526960 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019457 other downstream 3567251 10324549 ~ 10324665 (+) True XLOC_009715

Expression Profile

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