RNA id: TCONS_00019396


Basic Information

Item Value
RNA id TCONS_00019396
length 5781
RNA type mRNA
GC content 0.49
exon number 31
gene id XLOC_009671
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6750289 ~ 6800632 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCTCTATAAACTGGAACTATGCCGCGGGGCCGACCACGAAAACAAAGGATTAAAGATGACAACGAAATCGATGGAGGTCAAGGAGCAAGTTCAGAGAGCCAGAAGCATGCCGAAAACAAATGTAATGTTTGCTCCCAGAATTTCCCTAGTGAGAGTCAACTTCAGAGACACCTGCGAGACCATGAAGTCAATGATAAGCCATATCGGTGTGACCAGTGTCCGGCGTCCTTTAACGTGGAGTATAACCTTGACCTTCATAAATCCACCCACACCACCAGTGAACTCAAATGCCCGGTATGCCAAAAGAAGTTCTCAAGAGTGGCTAGTCTGAAGGCTCATGTGATGATACACGAGAAAGAAGAGAATTTCCTGTGCTCTGAGTGTGGAGATGAGTTTATCCTGCAGAGTCAGCTTTCTGTGCATCTGGAAGAACACCGGCAGGAACTCAGTGGAGCCAAGTCGTACACCTGCAAGACCTGCAGCAAAGAGTTTGTGACACAAAACCAGCTTAGAGAACATTTGAAAAGTCATGCCAAGATCAGGCCTATTATAACAAGTTCAAGAAACTACAAGAACATCGATCGAAGGGGATTCAAGAACATTTGCCACCACTGTGGGAAGACGTTCAAGAAACCCAGTCAGCTGGTTCGACATATACGCATTCACACAGGTGAAAGGCCGTATAAGTGCTCTCACTGTGGAAAGTCCTTCAACCAGAAAGTAGTGCTGCAGACTCACATGGCGGCTGGTGTTCCTCTCTTCCCATGTATGGACTGTAGCTGTGTGTATAAAAAGCTTGGAAGCCTTAATGCTCACATCAGCAAAATGCACATATCTGTAATGGAAGTGGAAGAGCCAGCCACACAGAAAGTACATGCGCAGGTTGATCAGGGTGCAGTAGGGTCAGAAGGCCCGGAGGGTGTGACAGATGTGATCCAACAGCTGCTGGAGCTTTCTGATCACGTGACGGCTGATAGTGCTCAGGCACCTCCACCTGGGCAAACCATAGGCGCAGCCATCAACCAGGACATCCTACAGCAAGCTTTGGAGAACAGCGGACTGACTGAGATACCTGTTCAGCCTGAAACTCAGAGCAGCTCCGAAAAGCTTCAGTCGGACACAGTTTCCCCGATGGCCAGTTCAACAGATGGACCAGTCCCTTCAAAAATACTCATGACTGACACAATAGTAATAAAGGAGAAAAGAAACATAATCAAAAAGCCTACACAGATGCTAGGCAACATCAGGCAGGAGAATGGTGTCAGGTGGCACGGTTGTCCGTACTGCTCCAAAGAGTTCAAAAAGCCTAGTGATCTGGTGCGTCACATCCGCATTCACACTCATGAGAAACCATACAAGTGCAAGCAGTGTTTCCGTGCCTTTgcggtcaagagcactctgaccgctcacatgaagatccacacagGCATTAAAGCCTTCGAGTGTCAGCACTGCAAGAAGTGTTTCTCCACATCTGGGAGCATGAAGGTCCATCAGCGTCTGCACACTGGTTTAAGGCCATTCCCTTGCCCTCACTGCGAGAAGTATTTTCGTACATCAGGCCACAGGAAAACACACGTCGCCTCTCACTTTAAGAGTATACACCATAAAAAACACAAGTACCCCCGAAAGCCTCACAAAACCAGAGTATCCCGCAGCAATCTGCCATTGCCTGATATTCCTCTCCAAGAGCCGATACTCATCACCGACATGGGACTCCTGCAGAACCAGAGCTCACGGGCCACCCTGCAGCAGTATCTGGACATTGTGGAAAACGAGCGTCCATACAAGTGCGGATACTGCAGCAAAGCTTACAAGAAGTCAAGCCACCTTAAGCAACACGTTAGGTCACACACAGGTGAGCGGCCGTATAAGTGCCTACAGTGCAGTAAGGGCTTTGCTTCGTCTGGTGTGCTGAAGGCTCATATCCGCACACACTCTGGCCTCAAAGCCTTCAAGTGTTTAATATGTGACACCACCTTCACCACCAGCGGGAGTCTGCGGCGCCACACGACTACACACAGCGACATGCGGCCCTACATGTGTCCCTACTGCCAGAAAACCTTCAAGTCCTCCCCCAACTGCAGAAAGCACATGAAAACACACAGGTATGAACTGGCTCAACAGCTGCAACAGCAGCAGGGCTCCACTGACATGCAGTCGACCGCTGCTGTGGATGGCACTGAGACCCAGAGCATACTTGAGGTAGTGACAGACGTGCAGCAGGTGACACTGGGGGAAGATCCACTGCAGGAAACAGAATCCTTTGTGAGTGCCCAGCATGCTCTACCTCAGTTTGAAGCACCAGCTCTGCCTCAGTCCACATTTGAACAGCCCACTATGACGCAAgGTTTCACAATATCTGAAGGATTCACCCAGCAGGCTCATTTCTCTACGGTACAGCAGCTTCAGGACTCAAGCACACTGGAGTCACAGGATTTGACCGCCAGCTACCATCCTCCCAACCTACTGCACGTAACACACACCGAGACAAGTGGTTTATTACAGGAGGCTAGTCAAGGAGAACTGCAGCTTTCTATCCAGACACAAAGCTTCCAGGATGAGGATGAGCTCAGCAAGAGAGTCTATCAGTGCAGTTTGTGTGATAAGGGTTTCAAAAAGTCCAGTCATTTAAAGCAGCATGTCCGCtcccacaccggagagaaaccgtatcGGTGTAACATCTGTGGACGGAGCTTTGTGTCCTCTGGGGTGCTCAAAtcacacctgaacacacacacagGGGTGAAGGCTTATAAATGTAATGTTTGTGAGACCTGTTTCACCACTAACGGTAGTCTGAATCGGCACATGATCATCCATTTGAACACAAAGCCCTTTAAATGCATTGTGTGTGATGAGAGCTTTCGTACCGTCATGCTGCGCAGGAAACACATGAAACTCCTGCACGCCGTAGGCCCCAAAGTTCTCGAAACCGATGAAGCTGGAGAGGAGGATGATGGGTCTGATCGCTCAGGGCTGAAAAGAAACCGCAACGGTATCATCACGTTAACTGAAGAGCAGACGGCAGAGCTGGCGAAGAGAGACCCAGGGGACGAGGCGTCTCTGTCAGAAAAGGTTCTTGCCCAGACAGCTGCCGAACGAGATCGTATTAGTGAAGTAAAAGATAAATGTGTCGAGCTCAACACTGAGCCCAAGTTTGCAAACCGCTGCCAATACTGCCCAAAGAGTTTCAAGAAGCCCAGTGACCTTGTCAGacATATTCGAATTCATACAGGCGAAAAACCGTACAAGTGCGATGAGTGTGGAAAGTCTTTCACAGTGAAATCCACACTGGACTGTCATGTTAAGACACACTCAGggcagAAGCTGTTCAGCTGCCACATGTGCAACACATCCTTCTCCACGAAGGGCAGTCTGAAAGTCCACATGCGTTTACACACAGGCTCCAAACCCTTCAAGTGCCCGTTCTGTGATCTCCGCTTCCGCACATCAGGCCATCGCAAAACTCACATCCAGGGTCACATCCGCTCATCTGACCGCAAGTCCAAGCGGAGCTCCAGCGCTGAGCCGCAGAACTCAGAAAGACAAGAAGTGCAAAGCGTTCCTCAGTCTCAGCATCCCTCCTCCGCCGTGGACACTCAGCATTCTGTGGGCTTACTGCAGAGCGCTGCCACAGATCCTAACATTTACATCCCAGCAAACCCAGTGCTCACAGGCCAGTATGATCACAGTCTGTTGCAGCAAGGGCTGGTCGGACAAGCTATATTGCCTGCTACTGTGTCAGCGGGTGGAGATCTGACCGTCTCTTTAGCAGAGGGTCTTGCTACACTTGAAGGGATTCACTTGCAGCTCACACCTACAAACCTGGTGTGTCCAAATGTCCAGATCTCTGGCATTGACCCCAGCAACATCAACAACATCACTTTGCAGatCGACCCCAGTATCTTGCAGGGCAGTTTGCTTTCTCACTCTCTGACGGCTGACTCAGGCTTGACGCAACACGCGACCGCTCACCTCATGACGGCTGGAGACGGTTCGGTTCCTGCCAATGTGGTCATTCACCCTCTGGGTGGCCTCTCGCTGCAGCCTCCACCCGCTCCAGCCAGCGTCACCATCAGCAGCCTGACAAACGAACAGGAGAATGCAGGATCTCAGGAGCTGACACAAGTGTCCGGTACTGCAGGTCTGCAGGTGAGCGGAGGCAGCAGTGCTCCAGAAATCACACTGACCATCAATAACTCCACTCTCACACAAGCTTTAGCGCAGAGCAGTGCTGCTGTGTCCACATCTGCCAACAGCGCACCGGAGATCACACTCACTATAGcaggtCAGGACTTGTTACCCCAGCACTGCCCGACATCTACATCCAACATGAGCACTGGGATCAGACTCACTCCAGGCAGCAGCAGTTTGACATTAACCAATGAGCAGCTCCTTCCTCACAGTCCTCCTCCTTCAGCCATGACAGTCAATGCACTAGCACCCAGCACCTCGCTATCCCAGACGGGCTTGTCAACTCAGAACCTGGTGATGTCATCAGCTGGCATGGTCAGTGATGGCAGTGTGACTCTGACTCTAGCGGACACACAGATTCTGGATACAGTCTCTCTCAACCTGAACACACAGATGATGGATAGCCAGCTTGAGGAGAAGGACGCGGAGGCACGGAGGAAGCACCAGTGTTACTACTGCGGTGAACTGATGCTGACAGCAAATTCTCTAAGAAGACACTGCAGACAGACACATGGAAAAGACCGCTGCCATGTATGCCATGTCTGCAATAAAGCCTTCAAACGAGCAACACACCTCAAGGAGCACGAGTATGTTCATAAGAAGGGCCCCAAAGTCAATTCCAAGCCCAGAATGTTCAAATGCCCAAACTGTGACAAAGCCTTCGCTAAACCCAGTCAGTTAGAGAGACACAATCGCACACACACAGGCGAGCGGCCGTTCAAGTGTCCGCTGTGTGACAAAGCCTTCAATCAGAAAAGTGCTCTGCAGGTGCACCGAGTCAAACACACAGGCGAGAAGCCCTACAGATGTGAAGTGTGCACTATTAGCTTCACACAGAAGAGCAACATGAAGCTGCACATGAAGAGATCTCATGGGTTTCTGCCGTCCTCTAGCAAACTGGGAAAAACAGAGGAAGTCGAAGTGGTGCTGGACCATGATTCTGACTCCGATTCCCAGCAAGCTTCATCCCAGGAGGGCAGAGGGTCTCGCTCGGGCCTGGATCTGGAGGAGGTTGGACAGGAGTCTTCAGGAGACTGGCAGTGCCGCATTCCCACAGTCTTCCCATGAACACCTTCACTTAACATTGGCCGATTGTTTGACATGAGCATTGCCAGTTACTTTAGTTGTTTACTCTTCTTGACTTGCATTCAAAGTCATGCATTAATGTGAATGTTTTCTATTGCTTAATGAACTACACATAACCCGGTGGAAGACAGAACTTGACGTTTGCAAGTTCAGCTTTTAAAtgcgcttttttttttaagttaaagatTTTTTCGATAGAGCCATACTCGACTCTGCTAAAGTGAAGATTGTAAGTGTGTAATGAAAGAGACAGTGTATAGTTTTCGTTTGTTTCTCTATCTGTGGTTTAACTAAAGCACCTATCTAGACATTGCTGTCTGCCGTTGTCAGTATGTCAGACTGTATAAATCAATTGATTAAAGCTGTAGAACTGCTTATTAGATGCCCGTAATCTTGGATATATGATGAATCTGTTTTATAGGTATGAGCCGGTTTTGgcacatttttttgtaatatgcaaaatatttAAGAATAAATGTTCTGTTCTTTCTCAGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-195 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF236 (zinc finger protein 236).

Ensembl:

ensembl_id ENSDART00000149720

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021880 lncRNA upstream 329307 6395303 ~ 6421449 (+) False XLOC_009668
TCONS_00021881 lncRNA upstream 337937 6395304 ~ 6412819 (+) False XLOC_009668
TCONS_00021882 lncRNA upstream 337937 6401591 ~ 6412819 (+) True XLOC_009668
TCONS_00021681 lncRNA upstream 1248057 5499274 ~ 5502699 (+) True XLOC_009659
TCONS_00019372 lncRNA upstream 1253993 5496172 ~ 5496763 (+) True XLOC_009658
TCONS_00019401 lncRNA downstream 143935 6944567 ~ 6947921 (+) True XLOC_009673
TCONS_00021883 lncRNA downstream 317515 7118147 ~ 7118568 (+) True XLOC_009675
TCONS_00019407 lncRNA downstream 426044 7226676 ~ 7232180 (+) True XLOC_009677
TCONS_00019408 lncRNA downstream 426952 7227584 ~ 7294953 (+) True XLOC_009678
TCONS_00021884 lncRNA downstream 714218 7514850 ~ 7515507 (+) True XLOC_009681
TCONS_00019394 mRNA upstream 3482 6738902 ~ 6747274 (+) True XLOC_009670
TCONS_00019391 mRNA upstream 4514 6727195 ~ 6746242 (+) False XLOC_009670
TCONS_00019393 mRNA upstream 4514 6735015 ~ 6746242 (+) False XLOC_009670
TCONS_00019390 mRNA upstream 96169 6632969 ~ 6654587 (+) True XLOC_009669
TCONS_00019389 mRNA upstream 403570 6336952 ~ 6347186 (+) True XLOC_009667
TCONS_00019397 mRNA downstream 63612 6864244 ~ 6932014 (+) False XLOC_009672
TCONS_00019398 mRNA downstream 63976 6864608 ~ 6933178 (+) True XLOC_009672
TCONS_00019399 mRNA downstream 143679 6944311 ~ 6951854 (+) False XLOC_009673
TCONS_00019400 mRNA downstream 143932 6944564 ~ 6955545 (+) False XLOC_009673
TCONS_00019403 mRNA downstream 156950 6957582 ~ 7062949 (+) False XLOC_009674
TCONS_00019392 other upstream 17120 6730506 ~ 6733636 (+) False XLOC_009670
TCONS_00019367 other upstream 1303982 5276676 ~ 5446774 (+) False XLOC_009658
TCONS_00019368 other upstream 1310701 5382382 ~ 5440055 (+) False XLOC_009658
TCONS_00019369 other upstream 1313982 5408651 ~ 5436774 (+) False XLOC_009658
TCONS_00019362 other upstream 1519359 5184402 ~ 5231397 (+) False XLOC_009657
TCONS_00019438 other downstream 2436500 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019442 other downstream 2725475 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019443 other downstream 2739401 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019455 other downstream 3483626 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019457 other downstream 3523917 10324549 ~ 10324665 (+) True XLOC_009715

Expression Profile

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