RNA id: TCONS_00019402


Basic Information

Item Value
RNA id TCONS_00019402
length 2775
RNA type mRNA
GC content 0.52
exon number 20
gene id XLOC_009674
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6957582 ~ 7062949 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCCACAGTTCTGGCTTCAGCGTTGCTGTCAGTACCATGACAACAGCGGGTCGAGTGTGAGGAGCTGAGATGTCTTGAGCTACCTGGTTTTACCACACAGTACTAGAGAAAACATCACTGCATTTACTACAGGATGTCTTTGTTTAAGGCCCGTGATTGGTGGGCGTCGGTGCTGGGCGAGGGCGAGGAGTTTGACCAGGGATGTCTGTGTGTTGGGGATGTGGATAACAGCGGTACTGGATATGATAAGATTATAGTGGGCAGTTTTATGGGGATGTTACGCATCTTCTCACCACACCCTGCTAAACCGGATGAGCTGACGGAAGCTGACACCCAACTGCTGGAGGTCCAGATGCCTGACCCCATCATTCAAGTGGAGCTGGGCAAGTTTGTCTCTTGTTCAGAGTCACTGCATCTGGCAGTTCTTCACCCCAGGAAGCTGTCTGTCTATGCTGTATCAGGCACCGCCGGTAATGTTGAACATGGTGACCAGTATCAGCTGCGACTGGTTTATGAACACAACCTGCAGAGAACAGCTTGCAACATGACGTATGGCCCATTCGGTGGTGTTACAGGTCATCATTTCATCTGTATCCAGTCCATGGATGGGATGCTCATGTTTTTTGAGCAGGAGAGTTATGCTTTTGGTCGCTTCCTGCCTGGTTTCCTGCTGCCCGGCCCATTGAGTTACTGCATTCGCACAGACTCCTTCATCACCGTCTCCTCCACACGGCAGGTGGAGTGTTACAGATACGAGACGCTGGCTGTGGCCACAGATGCAGACACCAAACAAGACTCGAATCAGCAAAGCAAGAGCTCAGGAAAAAGACTGACTGCTGACTGGACTCTTGTGTTAGGAGAAGAGGCTCTAGATATCTGTGTTCCCAACACGTCTCCGGCGATGTCCTCCATCTTTGTGCTGGGGGAGAGAAATCTGTTCTGTCTCAAGGACAACGGCCAGATCCGCTTCATGAAGAAACTGGAGTTCAACCCCAGCTGTTTTCTTCCTTATGCATCAGTGTCCGAGGGTTCCACCAACGTCCTGATGTGTAACCATAACAACATGCTGCTGGTGTACCAGGATGTGACGCTGAAGTGGGCCGCGCAGCTGTCCTGTGTGCCTGTGGCCGTGCGTGTCGCTAACTTTCTggAACTGAAGGGTTTGGTGGTGACTCTGAGCTCTGATGGGCATCTCCAGTGCTCTTACATGGGCACTGACCCCTCCTTCTTTACTGCACCCAAAGTGGACGCTAGAGAGGTCAACTATGATGAGATCGACACAGAGATGAAAATGCTGCAAAGGGTTATTCGCGAGGCTACCAAAACACAAGACATTCTCCCGAGGGCAGAGACCGAAGAAGAGCTCAGACTGACCGCCGTAGTCTCATCTAGCCTGGACGAAGTCTCGTGTGCTATTATACCTGAGATGAATGGGATGCCTGTGCCCTCTGTCACAGTAAAGGTTAAAATAAAGAGTCGAGCTGTGGTGCAGAACCCCAAAATGACGGTGTGTGTTCAGCCTCCTTTGGCTGTCACACAGGACCAGTTTGTGTTGGACTCTATGGGCAGTGGCAGTGAGTTAGTGGTGAGCTTCTCAGCGTTTCTGAACGGCCTCTATCCTCCAGCGGATATGAGCGGAGACATCGCCGTGTCCTACAGCTCAGCTACAGGAATCCCACGGGTGTCTCAGTGCAAATTCAGCCTGCCTCTTCGGTTAGTGTGTTACCCTTCCTCAGCCATCAAAAATGCCAAGTACAAGATCACTGTGGACACCAACAAACCTCCCGTCAACCTCAATGAAGTCTTCCCAGatttcTCAGAAAAGTCGGATAATAATGACAGCAGTGCTTTGGGCTTCCAACTCATCACAGGTTCCAAGGTCATTGTTCTTGCCTCCAAAACGTCCCAGCGTTACAGGATCCAGAGCGAGAGCTTTGAGGATATCTGGCTGGTGGCCAAGGAGCTGGTGCAGCGTTTCGACCAGCACTTTGCCTCCCTTGGAGTCAAAGACTTTCGAAACAGCTTCACTGGACCCATTCCACTGCCTGAGTACTTTGAGACCGTGGACCACCACTTTGAGCTCCGTGTGAATGCACAGAAGTATCAAGACTTACTGTCGGAGAGGGCAGTCCAGTTTAGGGCCATCCAGCGCCGTCTGCTGACCCGATTTAAAGACAAAACTCCAGGGCCACTTCAAAACCTGGACACACTGATGGAGGGAACGTACCGTCAGGTTCTAGCATTAGCAGACGCAGCAGAGGACAACCGTGAGCGTTTGATCCAGGCGTTTGCACGTTTACGGAGCGCGACTCACCTCCTCATCCTGCTGCTGTCTCTGTGGCAGGGGCTGAACTCCGAGCAGACCACCATCCTGGAGGCCACTCTCCTGCCACTGCTGCAGGACACACCGCAGCTTGGGTGGGAAGAGAGCGTGGATGCAGCCGTCTCTCACCTCTTAAAAACGTGTCTGTCACGCAGCCCCAAGGATCAGGCTATCAGCTTGAGCACGGGCCCGCTAACCATCCCGAAAGACACGTCCCGGCTGAAGAAACACATAATGCTGCTGTGTGACCGCTTGGGCAAGGGTGgccgtctctctctctcctcagaGGCCAATGTGCCTACTGCTGTCATGATGCCAGGTTAGAAACATCTCAGTTTGCAATGCAAAAAAAGAGGATCTTTATTGAAAACCTCAAGCCAATATGTTTAAATGCCTTCACTAGGCACAATATGCTTTTGttgcttgctcaaactacttatttaaaatgagc

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0001843 neural tube closure biological_process
GO:0097205 renal filtration biological_process
GO:0007369 gastrulation biological_process
GO:0060271 cilium assembly biological_process
GO:0001654 eye development biological_process
GO:0010842 retina layer formation biological_process
GO:0034464 BBSome cellular_component
GO:0005929 cilium cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-081027-4 Acts upstream of or within several processes, including embryonic morphogenesis; renal filtration; and retina layer formation. Predicted to be part of BBSome. Predicted to be active in membrane. Is expressed in brain; eye; and somite. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 9; craniosynostosis; and primary ovarian insufficiency. Orthologous to human BBS9 (Bardet-Biedl syndrome 9).

Ensembl:

ensembl_id ENSDART00000111308

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019401 lncRNA upstream 9661 6944567 ~ 6947921 (+) True XLOC_009673
TCONS_00021682 lncRNA upstream 200284 6750747 ~ 6757298 (+) False XLOC_009671
TCONS_00021880 lncRNA upstream 536133 6395303 ~ 6421449 (+) False XLOC_009668
TCONS_00021883 lncRNA downstream 55198 7118147 ~ 7118568 (+) True XLOC_009675
TCONS_00019407 lncRNA downstream 163727 7226676 ~ 7232180 (+) True XLOC_009677
TCONS_00019408 lncRNA downstream 164635 7227584 ~ 7294953 (+) True XLOC_009678
TCONS_00021884 lncRNA downstream 451901 7514850 ~ 7515507 (+) True XLOC_009681
TCONS_00019412 lncRNA downstream 501578 7564527 ~ 7566095 (+) True XLOC_009682
TCONS_00019400 mRNA upstream 2037 6944564 ~ 6955545 (+) False XLOC_009673
TCONS_00019399 mRNA upstream 5728 6944311 ~ 6951854 (+) False XLOC_009673
TCONS_00019398 mRNA upstream 24404 6864608 ~ 6933178 (+) True XLOC_009672
TCONS_00019397 mRNA upstream 25568 6864244 ~ 6932014 (+) False XLOC_009672
TCONS_00019396 mRNA upstream 156950 6750756 ~ 6800632 (+) True XLOC_009671
TCONS_00019405 mRNA downstream 91317 7154266 ~ 7184855 (+) False XLOC_009676
TCONS_00019406 mRNA downstream 91804 7154753 ~ 7195000 (+) True XLOC_009676
TCONS_00019409 mRNA downstream 179661 7242610 ~ 7260345 (+) True XLOC_009679
TCONS_00019410 mRNA downstream 317514 7380463 ~ 7416532 (+) False XLOC_009680
TCONS_00019411 mRNA downstream 317550 7380499 ~ 7416521 (+) True XLOC_009680
TCONS_00019392 other upstream 223946 6730506 ~ 6733636 (+) False XLOC_009670
TCONS_00019367 other upstream 1510808 5276676 ~ 5446774 (+) False XLOC_009658
TCONS_00019368 other upstream 1517527 5382382 ~ 5440055 (+) False XLOC_009658
TCONS_00019369 other upstream 1520808 5408651 ~ 5436774 (+) False XLOC_009658
TCONS_00019362 other upstream 1726185 5184402 ~ 5231397 (+) False XLOC_009657
TCONS_00019438 other downstream 2174183 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019442 other downstream 2463158 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019443 other downstream 2477084 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019455 other downstream 3221309 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019457 other downstream 3261600 10324549 ~ 10324665 (+) True XLOC_009715

Expression Profile

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