RNA id: TCONS_00019405


Basic Information

Item Value
RNA id TCONS_00019405
length 2181
RNA type mRNA
GC content 0.51
exon number 12
gene id XLOC_009676
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7154266 ~ 7195000 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGAGGGGGCAGATATCTGTGGACTGGAGGACGGACTTCCACCGCGGGAATGTTTAACTGGAGCTCTGAAGCCGGCGTCGTATCCGAAAAGTCTGTCAGAAATTATCCGGAGCGCTTTGACCAAACCTGGAGCTTCAGTCGGATCATGGCAGTGTCATCATCCATGCGCGCGCTCGTCTCCAGAAGACCACTGGATCTTATCTCGGTTTTAAACTCTTTGTGGAGTTTGTGACCTGCTAATCTGGATCTTCAGAAAGTTGTTTCGCCGCTgaggtgtttttgtttgtttgtttggaccGTTATTATAATGTTGAGGTGATTTTTCCGTCGCGCGAAGCTTCGCTGAAGGTTTCAGGATTATGAGTCCCTCATGACACCGATGTCTCCCTCTTGCTGGATTTTAAAGAAGACCGTTTCTACAGGCTTGGGATACTTTggtttttcattttgtttctttACCCCCCGTGCGTCTGGAGCGAATTTAGGATGCTGTGTCTGTCTCCTCCAGTAACCTACAACCTGTTATTCTGGTTTTTAATTCTCCAAACGCCACAATCAACTGCACCTTTAATCACCGGTACAGAGGCTAGCTGTGAAAACGAGGGAGAAGTGTTACACATCCCCAACATCACAGACAACCCCTGCATCTCCTGCGTCTGTCTGAATCAGAAAGCGGAGTGTAAGCAGGAGAAGTGTGCACCGCTGGCAGAGGACTGTGCGCTGGTGGTCAAACAGACGGGAGCCTGCTGTGAAAAATGCAAAGGTTGTCTTCTGAAAGGGACGTCCTACAACAGTTCCCATCACTGGATAAGCCCTGTGAAACCCTGTGTCACGTACAGCTGTCAGGAAGGTGTCATCACTGAAGCAGAGATGAGGTGTGTCATTCACTGTAAGAACCCTAAAATCCACCCCAAGAAATGCTGCCCTACATGTCCAGGGTGCATTTTTGAGGGGAATTTATATAAAGAAGATGAAGAATTTCACCCTGAAGGGAATCCCTGTATTAAATGCGTCTGCACTggAGGGCAAAGCATGTGTCATAAATTGGTGTGTCCTGTTCTGTCCTGCCCGTCTCATCTTACCCACACTCCACCTGGCCAGTGCTGTCCAAGATGTCGGGGTCAGAGGAGGGTGTTTGACTTATCGCCAGGCAGCTGTTTGTTCCATAGTGAGGTTTATGAGAACGGCTCCTCTATCAGCTATGATAACTGCACCACCTGCACCTGTGTGGACTCCACAGTGCTCTGCAGGAAGAGATGCTCTCCGCCTGGCAGCTGTCATGGCACTGCCTGCTGCGAAGCCTGCCAGTCTCTCCTCAAGATGGAAGATGTGAAATACTGCAGAGTCAAGAGCAAAATCTATAGGGATGGCGACAGATGGTCGTCTGTGAACTGTTCTCTGTGCACATGCGTTAAAGGGAATATTCAATGTCAGCCTAAGATTTGCGTTCCTATCACCAGCTGTCCCTCGAATAAGATACTGAATCGCACTGGCTGCTGTCCTGTTTGCACTGACAAGCCAGGCGTGTGTACCGTATTTGGAGACCCTCACTATAACACTTTTGATGGCCGTACCTTCAACTTCCAGGGCACGTGTAAATATGTGCTCACCAAGGACTGTTCCCCAGCGGCCAGTTTCACAGTGCTTGTGAAGAACGATGCCCGACGCACACGTTCCTTCTCATGGACCAAATCAGTGGAGCTGCACACGTCCGGTCTGAGCATCAGCCTTCACCAACACCTGACCGTCCGGCAGAACGGCACACGCATCGCTCTTCCCTTTCACAGCACCGGCGTCCACATCGACCTGGATGGATACCTGCTCAAACTCACCACCATCGCAGGACTGGAGATCACGTGGGATGGGGACAGTCTGGTGGAGGTGGTCGCAGCGCCTCATCTGAAGGGGCAGCTGTGTGGTCTTTGTGGAAACTACAACGGTCAGCGGCGAGACGACTCTCTTGGAGGAGACGGACAGTTTAAGTTTGACGTGGATGAACTTGCTGAATCGTGGCGTGTGGAGGACAACGAGCTGTGCGAAGTACAGAACCGCCGGCCCACATCCTTTCTCTGTGCCGGAACAGTCAAGGTGAAGCTCCGCGCTCACAGAACCTGCCAGAAGCTCAAGTCCTGGGAGTTTCAGAAGTGCCACTCTGCTGTCGACTTTACCTCCTTTTACAA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0043049 otic placode formation biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0001568 blood vessel development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0014029 neural crest formation biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005515 protein binding molecular_function
GO:0050840 extracellular matrix binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030219-146 Enables extracellular matrix binding activity. Acts upstream of or within several processes, including animal organ development; regulation of BMP signaling pathway; and regulation of angiogenesis. Located in extracellular matrix and extracellular space. Is expressed in several structures, including head; hematopoietic system; mesoderm; nervous system; and pectoral fin. Orthologous to human BMPER (BMP binding endothelial regulator).

Ensembl:

ensembl_id ENSDART00000168830

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021883 lncRNA upstream 35698 7118147 ~ 7118568 (+) True XLOC_009675
TCONS_00019401 lncRNA upstream 206345 6944567 ~ 6947921 (+) True XLOC_009673
TCONS_00021682 lncRNA upstream 396968 6750747 ~ 6757298 (+) False XLOC_009671
TCONS_00021880 lncRNA upstream 732817 6395303 ~ 6421449 (+) False XLOC_009668
TCONS_00019407 lncRNA downstream 41821 7226676 ~ 7232180 (+) True XLOC_009677
TCONS_00019408 lncRNA downstream 42729 7227584 ~ 7294953 (+) True XLOC_009678
TCONS_00021884 lncRNA downstream 329995 7514850 ~ 7515507 (+) True XLOC_009681
TCONS_00019412 lncRNA downstream 379672 7564527 ~ 7566095 (+) True XLOC_009682
TCONS_00021885 lncRNA downstream 607866 7792721 ~ 7793768 (+) True XLOC_009688
TCONS_00019403 mRNA upstream 91317 6957582 ~ 7062949 (+) False XLOC_009674
TCONS_00019402 mRNA upstream 91317 6957582 ~ 7062949 (+) False XLOC_009674
TCONS_00019404 mRNA upstream 166667 6957602 ~ 6987599 (+) True XLOC_009674
TCONS_00019400 mRNA upstream 198721 6944564 ~ 6955545 (+) False XLOC_009673
TCONS_00019399 mRNA upstream 202412 6944311 ~ 6951854 (+) False XLOC_009673
TCONS_00019409 mRNA downstream 57755 7242610 ~ 7260345 (+) True XLOC_009679
TCONS_00019410 mRNA downstream 195608 7380463 ~ 7416532 (+) False XLOC_009680
TCONS_00019411 mRNA downstream 195644 7380499 ~ 7416521 (+) True XLOC_009680
TCONS_00019414 mRNA downstream 441680 7626535 ~ 7638477 (+) False XLOC_009683
TCONS_00019413 mRNA downstream 441680 7626535 ~ 7638477 (+) False XLOC_009683
TCONS_00019392 other upstream 420630 6730506 ~ 6733636 (+) False XLOC_009670
TCONS_00019367 other upstream 1707492 5276676 ~ 5446774 (+) False XLOC_009658
TCONS_00019368 other upstream 1714211 5382382 ~ 5440055 (+) False XLOC_009658
TCONS_00019369 other upstream 1717492 5408651 ~ 5436774 (+) False XLOC_009658
TCONS_00019362 other upstream 1922869 5184402 ~ 5231397 (+) False XLOC_009657
TCONS_00019438 other downstream 2052277 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019442 other downstream 2341252 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019443 other downstream 2355178 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019455 other downstream 3099403 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019457 other downstream 3139694 10324549 ~ 10324665 (+) True XLOC_009715

Expression Profile

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