Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019413 |
| length | 868 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 10 |
| gene id | XLOC_009683 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 7626535 ~ 7641367 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0006906 | vesicle fusion | biological_process |
| GO:0048278 | vesicle docking | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0098837 | postsynaptic recycling endosome | cellular_component |
| GO:0012505 | endomembrane system | cellular_component |
| GO:0030285 | integral component of synaptic vesicle membrane | cellular_component |
| GO:0008021 | synaptic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0031201 | SNARE complex | cellular_component |
| GO:0005484 | SNAP receptor activity | molecular_function |
| GO:0000149 | SNARE binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-110715-1 | Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynaptic recycling endosome and synaptic vesicle. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human STX12 (syntaxin 12). |
| ensembl_id | ENSDART00000065514 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019412 | lncRNA | upstream | 60440 | 7564527 ~ 7566095 (+) | True | XLOC_009682 |
| TCONS_00021884 | lncRNA | upstream | 111028 | 7514850 ~ 7515507 (+) | True | XLOC_009681 |
| TCONS_00019408 | lncRNA | upstream | 331582 | 7227584 ~ 7294953 (+) | True | XLOC_009678 |
| TCONS_00019407 | lncRNA | upstream | 394355 | 7226676 ~ 7232180 (+) | True | XLOC_009677 |
| TCONS_00021883 | lncRNA | upstream | 507967 | 7118147 ~ 7118568 (+) | True | XLOC_009675 |
| TCONS_00021885 | lncRNA | downstream | 154244 | 7792721 ~ 7793768 (+) | True | XLOC_009688 |
| TCONS_00021886 | lncRNA | downstream | 717002 | 8355479 ~ 8372570 (+) | True | XLOC_009691 |
| TCONS_00021887 | lncRNA | downstream | 1326412 | 8964889 ~ 8965839 (+) | True | XLOC_009696 |
| TCONS_00021888 | lncRNA | downstream | 1327732 | 8966209 ~ 8966926 (+) | True | XLOC_009697 |
| TCONS_00021889 | lncRNA | downstream | 1865896 | 9504373 ~ 9505519 (+) | True | XLOC_009702 |
| TCONS_00019410 | mRNA | upstream | 210003 | 7380463 ~ 7416532 (+) | False | XLOC_009680 |
| TCONS_00019411 | mRNA | upstream | 210014 | 7380499 ~ 7416521 (+) | True | XLOC_009680 |
| TCONS_00019409 | mRNA | upstream | 366190 | 7242610 ~ 7260345 (+) | True | XLOC_009679 |
| TCONS_00019406 | mRNA | upstream | 431535 | 7154753 ~ 7195000 (+) | True | XLOC_009676 |
| TCONS_00019405 | mRNA | upstream | 441680 | 7154266 ~ 7184855 (+) | False | XLOC_009676 |
| TCONS_00019416 | mRNA | downstream | 15428 | 7653905 ~ 7658707 (+) | True | XLOC_009684 |
| TCONS_00019417 | mRNA | downstream | 24132 | 7662609 ~ 7681144 (+) | False | XLOC_009685 |
| TCONS_00019419 | mRNA | downstream | 24190 | 7662667 ~ 7679980 (+) | False | XLOC_009685 |
| TCONS_00019418 | mRNA | downstream | 24190 | 7662667 ~ 7679980 (+) | False | XLOC_009685 |
| TCONS_00019420 | mRNA | downstream | 24192 | 7662669 ~ 7679980 (+) | True | XLOC_009685 |
| TCONS_00019392 | other | upstream | 892899 | 6730506 ~ 6733636 (+) | False | XLOC_009670 |
| TCONS_00019367 | other | upstream | 2179761 | 5276676 ~ 5446774 (+) | False | XLOC_009658 |
| TCONS_00019368 | other | upstream | 2186480 | 5382382 ~ 5440055 (+) | False | XLOC_009658 |
| TCONS_00019369 | other | upstream | 2189761 | 5408651 ~ 5436774 (+) | False | XLOC_009658 |
| TCONS_00019362 | other | upstream | 2395138 | 5184402 ~ 5231397 (+) | False | XLOC_009657 |
| TCONS_00019438 | other | downstream | 1598655 | 9237132 ~ 9237246 (+) | True | XLOC_009699 |
| TCONS_00019442 | other | downstream | 1887630 | 9526107 ~ 9527209 (+) | False | XLOC_009704 |
| TCONS_00019443 | other | downstream | 1901556 | 9540033 ~ 9558103 (+) | True | XLOC_009705 |
| TCONS_00019455 | other | downstream | 2645781 | 10284258 ~ 10292937 (+) | True | XLOC_009713 |
| TCONS_00019457 | other | downstream | 2686072 | 10324549 ~ 10324665 (+) | True | XLOC_009715 |
