RNA id: CI01000299_04864582_04885052.mRNA


Basic Information

Item Value
RNA id CI01000299_04864582_04885052.mRNA
length 1866
RNA type mRNA
GC content 0.56
exon number 5
gene id CI01000299_04864582_04885052
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4864192 ~ 4885385 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATTTAAAACACGAGCCTCTATATACACTAGCTAGTCATCCAACCCTTTGACCGTTGAACCTCTTCACTGTGGTAGCGGAGTGCAGTAATGCCATTTTTGTGGGCTGTATTTTAGATATTTGACATTGCAGCAGCCTCGTGGGAAAACAAGGAACGACTTCTGAAGGTGTTCGTGATATGCGAATCGTGATGACAGAGCAGTTAGTCAACAGAATGACTAGCTTCTAAGAAATGAAGAGGAGTCCCACAGGGCTCTATTCAAGGCCCGATGTGATTTCGTTGATATAGCCCTCCACACTAATGTAAAAGGCCTAATGCTCATTTATGTTTCAGAACCTGCGCCTGGGCGACGCTTCACGCCTCCCTCGACCACGCTGAGCTCGGGGAAGATGAACGAGGGGTTGCCGCTGGGGGCTCAGGAAAGCAGCGGCGCCGCCCTGGTGGGCAAACTGCGCATGGCTGACCGGAGCATGGTGGAGGTGCTTTCCGACCACCCAGGAGAGCTGGTGCGCACCGACAGCCCCAACTTCCTCTGCTCCGTCCTGCCAACACACTGGCGCTGCAATAAAACCCTGCCCATCGCTTTCAAGGTGGTTGCCCTCGGCGATATCCCTGACGGCACGCTGGTCACCGTGATGGCCGGCAACGATGAGAACTATTCTGCCGAACTCCGCAACGCCACGGCTGCCATCAAGAACCAAGTGGCACGTTTCAACGACCTGCGTTTCGTCGGCCGCAGCGGACGAGGAAAGAGCTTCACTCTCACCATCACCGTCTTCACGAACCCTCCTCAGGTGGCCACTTATCAGAGAGCCATCAAGATCACTGTGGACGGACCCCGAGAACCACGCCGCCACCGACAGAAGCCGGATGAAGCGGTAAAGCCAGGCGCGTTAGCTTTCTCTGAGCAGTTGAGGCGAAGTGCCATGCGGTGCAGTCCACACCACGGCCCCGCCCCCAACCCCCGCCCCGCCCTCAACACGCCCCCCTTCAGCAGCCCCGCCCACAGCCAGATTCCCGGTCCAGATCTGACGGCGTTCACTGACCCTCGCGTCGGCCTGGAGCGTTCCTTCCCCTCGCTCCCCTCCCTACCAGACGGCCGTTTCTCGGATCCGCGCGTGCCGTACCCCACCGGGGCGTTTACGTACACGCCCACCCCTGTCACCAACGCCATCGGCATCGGCATGTCGGCTATGACAAGCCCCGCGGGCCGCTACCACACATACTTACCGCCGGCGTACCCCGCGGGGTCCTCGCAGGCTCAGGCCGGACCCTTCCAGGCCGGCTCGTCCCCGTATCACCTCTACTACAGCAGTGCCGCCGGATCCTACCAGTTCTCCATGATGCCGGGCGGAGGAGGAGGCGAGCGCTCGCCGCCGCGCATCTTACCGCCCTGCACCAACGCCTCCACAGGCTCCGCCCTCCTGCACCCCTCTCTGCCCAATCAGAGCGACGTCGTGGTGGAGGCCGAAGGAAGCCACAGCAGTTCGCCGACCAACATGTCGGTCGAAGCCGTCTGGAGGCCGTATTGACGTTTGAACAGGTCGACGGACAGTCGGCTTGACCAATAGGACGCGGGCAGCTGAACGAGGCGGTTTCTGATTAGAGCAATTGACTCAAAGGACAGACTTTTTCACAGCACAGCATGAGACTCGCTTGCTTTTTTTAAAGTGGATAGTTTGTATTATTATTATTATTATTATTAAAATTATTGTTGTTGTTGTTATTATTATTATTACTGTTGTTCGTCTCATCATCACTGTACTTTTATCAGTGCCTCTGTGTTTTATGTCAAACAAAACCTCACCATGTTTCGTCAAAGGCCAGAAACACACTCTATGCAAGTATTTAAATGCATATCGCTA

Function

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process

KEGG:

id description
K08367 RUNX1, AML1; runt-related transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466552 lncRNA upstream 97969 4690895 ~ 4766223 (+) True G406023
TU466373 lncRNA upstream 159412 4702382 ~ 4702508 (+) False G405864
TU466490 lncRNA upstream 192297 4671525 ~ 4671895 (+) True G405967
TU466489 lncRNA upstream 192710 4671215 ~ 4671482 (+) True G405966
TU466381 lncRNA upstream 199148 4663934 ~ 4665044 (+) True G405865
TU466536 lncRNA downstream 24532 4910196 ~ 4912524 (+) True G406007
TU466528 lncRNA downstream 48930 4934315 ~ 4936448 (+) True G405999
TU466657 lncRNA downstream 70765 4956150 ~ 4956356 (+) True G406101
TU466701 lncRNA downstream 371354 5256739 ~ 5257212 (+) True G406134
TU466774 lncRNA downstream 426783 5312168 ~ 5745426 (+) True G406203
CI01000299_04819297_04829755.mRNA mRNA upstream 34205 4818685 ~ 4829987 (+) True CI01000299_04819297_04829755
CI01000299_04736806_04740333.mRNA mRNA upstream 123217 4736806 ~ 4740975 (+) True CI01000299_04736806_04740333
CI01000299_04703290_04704365.mRNA mRNA upstream 159595 4703071 ~ 4704597 (+) False CI01000299_04703290_04704365
CI01000299_04554181_04557794.mRNA mRNA upstream 306352 4554111 ~ 4557840 (+) True CI01000299_04554181_04557794
CI01000299_04532498_04539703.mRNA mRNA upstream 324273 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
CI01000299_04892566_04900169.mRNA mRNA downstream 5006 4890391 ~ 4900536 (+) True CI01000299_04892566_04900169
CI01000299_04906697_04907091.mRNA mRNA downstream 21312 4906697 ~ 4910073 (+) False CI01000299_04906697_04907091
CI01000299_05128395_05192154.mRNA mRNA downstream 242963 5128348 ~ 5192994 (+) True CI01000299_05128395_05192154
CI01000299_05254419_05314859.mRNA mRNA downstream 369034 5254419 ~ 5316243 (+) True CI01000299_05254419_05314859
CI01000299_05331367_05364944.mRNA mRNA downstream 445816 5331201 ~ 5364977 (+) True CI01000299_05331367_05364944
TU466374 other upstream 159567 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 358275 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 544051 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 730251 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1709018 3154597 ~ 3155174 (+) True G405609
TU466651 other downstream 39077 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 485796 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 1352453 6237838 ~ 6300508 (+) True G406161

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001489 True 2220 mRNA 0.52 7 NC_007112.7 1362932 ~ 1402303 (-)
eurasian perch (Perca fluviatilis) TU320621 True 1794 lncRNA 0.44 2 NC_053135.1 20633878 ~ 20635879 (-)
bowfin (Amia calva) AMCG00014112 True 2867 mRNA 0.61 6 CM030128.1 2008602 ~ 2022266 (+)