Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00021892 |
| length | 4379 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 1 |
| gene id | XLOC_009712 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 10012335 ~ 10016713 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048731 | system development | biological_process |
| GO:0050879 | multicellular organismal movement | biological_process |
| GO:0050881 | musculoskeletal movement | biological_process |
| GO:0051146 | striated muscle cell differentiation | biological_process |
| GO:0006936 | muscle contraction | biological_process |
| GO:0006941 | striated muscle contraction | biological_process |
| GO:0010927 | cellular component assembly involved in morphogenesis | biological_process |
| GO:0043624 | cellular protein complex disassembly | biological_process |
| GO:0031032 | actomyosin structure organization | biological_process |
| GO:0007010 | cytoskeleton organization | biological_process |
| GO:0007015 | actin filament organization | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:0097435 | supramolecular fiber organization | biological_process |
| GO:0051261 | protein depolymerization | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0003008 | system process | biological_process |
| GO:0003009 | skeletal muscle contraction | biological_process |
| GO:0003012 | muscle system process | biological_process |
| GO:0030029 | actin filament-based process | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0061061 | muscle structure development | biological_process |
| GO:0032501 | multicellular organismal process | biological_process |
| GO:0032502 | developmental process | biological_process |
| GO:0060048 | cardiac muscle contraction | biological_process |
| GO:0016043 | cellular component organization | biological_process |
| GO:0099080 | supramolecular complex | cellular_component |
| GO:0099081 | supramolecular polymer | cellular_component |
| GO:0043292 | contractile fiber | cellular_component |
| GO:0044449 | obsolete contractile fiber part | cellular_component |
| GO:0036379 | myofilament | cellular_component |
| GO:0005861 | troponin complex | cellular_component |
| GO:0005865 | striated muscle thin filament | cellular_component |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0099512 | supramolecular fiber | cellular_component |
| GO:0031674 | I band | cellular_component |
| GO:0030016 | myofibril | cellular_component |
| GO:0030017 | sarcomere | cellular_component |
| GO:0030018 | Z disc | cellular_component |
| GO:0051015 | actin filament binding | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| GO:0044877 | protein-containing complex binding | molecular_function |
| GO:0008092 | cytoskeletal protein binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019448 | lncRNA | upstream | 290197 | 9717781 ~ 9722138 (+) | True | XLOC_009708 |
| TCONS_00021891 | lncRNA | upstream | 484029 | 9526107 ~ 9528306 (+) | True | XLOC_009704 |
| TCONS_00021890 | lncRNA | upstream | 484114 | 9526080 ~ 9528221 (+) | False | XLOC_009704 |
| TCONS_00021683 | lncRNA | upstream | 496528 | 9515326 ~ 9515807 (+) | True | XLOC_009703 |
| TCONS_00021889 | lncRNA | upstream | 506816 | 9504373 ~ 9505519 (+) | True | XLOC_009702 |
| TCONS_00021894 | lncRNA | downstream | 361618 | 10378331 ~ 10379821 (+) | True | XLOC_009718 |
| TCONS_00019461 | lncRNA | downstream | 371006 | 10387719 ~ 10389787 (+) | True | XLOC_009719 |
| TCONS_00021684 | lncRNA | downstream | 600641 | 10617354 ~ 10617686 (+) | True | XLOC_009724 |
| TCONS_00019471 | lncRNA | downstream | 796083 | 10812796 ~ 10813628 (+) | True | XLOC_009726 |
| TCONS_00019474 | lncRNA | downstream | 841522 | 10858235 ~ 10859866 (+) | False | XLOC_009727 |
| TCONS_00019452 | mRNA | upstream | 226076 | 9779680 ~ 9786259 (+) | True | XLOC_009711 |
| TCONS_00019451 | mRNA | upstream | 234407 | 9762261 ~ 9777928 (+) | True | XLOC_009710 |
| TCONS_00019449 | mRNA | upstream | 250362 | 9726038 ~ 9761973 (+) | False | XLOC_009709 |
| TCONS_00019450 | mRNA | upstream | 253765 | 9726040 ~ 9758570 (+) | True | XLOC_009709 |
| TCONS_00019447 | mRNA | upstream | 286903 | 9713850 ~ 9725432 (+) | False | XLOC_009708 |
| TCONS_00019453 | mRNA | downstream | 247573 | 10264286 ~ 10284874 (+) | False | XLOC_009713 |
| TCONS_00019454 | mRNA | downstream | 247888 | 10264601 ~ 10284462 (+) | False | XLOC_009713 |
| TCONS_00019456 | mRNA | downstream | 302180 | 10318893 ~ 10327620 (+) | True | XLOC_009714 |
| TCONS_00019458 | mRNA | downstream | 312988 | 10329701 ~ 10342612 (+) | False | XLOC_009716 |
| TCONS_00019459 | mRNA | downstream | 313465 | 10330178 ~ 10345769 (+) | True | XLOC_009716 |
| TCONS_00019443 | other | upstream | 454232 | 9540033 ~ 9558103 (+) | True | XLOC_009705 |
| TCONS_00019442 | other | upstream | 485126 | 9526107 ~ 9527209 (+) | False | XLOC_009704 |
| TCONS_00019438 | other | upstream | 775089 | 9237132 ~ 9237246 (+) | True | XLOC_009699 |
| TCONS_00019392 | other | upstream | 3278699 | 6730506 ~ 6733636 (+) | False | XLOC_009670 |
| TCONS_00019369 | other | upstream | 4575561 | 5408651 ~ 5436774 (+) | False | XLOC_009658 |
| TCONS_00019455 | other | downstream | 267545 | 10284258 ~ 10292937 (+) | True | XLOC_009713 |
| TCONS_00019457 | other | downstream | 307836 | 10324549 ~ 10324665 (+) | True | XLOC_009715 |
| TCONS_00019473 | other | downstream | 824451 | 10841164 ~ 10856409 (+) | False | XLOC_009727 |
| TCONS_00019483 | other | downstream | 1225847 | 11242560 ~ 11290883 (+) | False | XLOC_009731 |
| TCONS_00019500 | other | downstream | 1683933 | 11700646 ~ 11703337 (+) | False | XLOC_009744 |
