RNA id: CI01000299_05799020_05801977.mRNA



Basic Information


Item Value
RNA id CI01000299_05799020_05801977.mRNA
length 1463
RNA type mRNA
GC content 0.50
exon number 3
gene id CI01000299_05799020_05801977
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5798942 ~ 5802114 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAAATCAATTGTTTCTCAAGAGAATTTAAGGCAAAACTTTTGTCAAAAAGCTCTATGTAGCGAACACGTTCTAGATGAGTGGCGCTGAAGGTGTGTTCACATACCAGGAATGCATTATGGATGTGTGTAAACAGGTTGTGAATGGGAGGACAGCTGTGGGCGAGTGGCTGGAACATGCACGGCATCACGCCGCATGGTCTGACAACTCTACCAGTCCATGGCAAAGATGTTCAGTGATTAAAGGAGAGTTGCTGAGAGTATCAATGTCTGACAAACTGCTGATGAATGACACCTCAAGCTCCAACCACACGTCTGTCTACCCCAGCGAAGGCATGCGCATTCTGCAGATGATCGTGACCGTGATGATCTTCATCGTGGGTGTTTCTCTAAACGGTCTGGTGGTCTGGGCGTTGGGGGTTCGAGTTTGGTGCCGCAATAAGGGATCCACAGAGACGCAGAGCGCCGACAGCTTCCGGATCTATGTAGTAAACCTGGCGCTTGCAGACTTGGTGCTGCTGTTACGTACGCCACTAATGGTGCCGTACTTGGTGAACCACTTCACTTGGACATTGGGGGAAACCGCATGTAAGCTGGTCATTTACCTGCGCTGCCTCGGATTGTACGCGAGCGCGTTTTTGCTGTGCGCTGTCGCAGTGGAGCGCTGCTTATGTCTCCTTAGACCAGTTTGGGCACGAATGAAGCGCCCTCGTTGGGCCGTGCCGTTGGCCTGCGTTGCAATCTGGGTGTTAGCGGCATTGTTCGCTTTACCCTACATTGGCACAGCCAAAATCATTCTCTGGGAGAACCGTACGGCCTGCATAGAAAGTGATTTGGGAGTAGGACAAGCCTTAATAGTTGTGGAAACCTTGGCAGGATTCTTGCTACCGCTGGTGATCTTCATGTCGTGCAATATTGCAGTGATTTTTTGCGCAAAGAAGGCCGAAAGCGCAATGTCTTCCCCTACCACGTCATCTGGACCAGGTTACACAACCCACCGGCTGACTCGTCTCTACCGGGTCCTCTTTCTCACCATGCTCCTCTTCCTAACCTGCTGGGTGCCTTACTTCACCTGCCGCTTCTTAAGGGCTCTCTCACAGGATCACCCGAAGCTCAAAGAAAGAGTGATTGCAGGCGCTTATGTGGCGCTATTTCTAGTTTACATTAAGAGCGCACTCAACCCCATCCTGTACGTGTTTGCAGCTCGTGGACTCGGCCGCACCATTCGTGCCTCACTTCTCTCAACAATCGAGCGAGTCTTCAATGAGGAATTATCCGAGTCTTTACGAAGAAAGTCCTTGCGAAGGAGAGACTCTCAGTTTTAGGGGAGCTTGAAGAGCTTTAGCGTAAAGTGCCGATCTGTGACCGGCTCTAGCAAGAGTCAGGAGGTCAAGAAATTTGGACAAACAAGCAGATCTCAGGTGCTTTTGAGCGGGCAAATCATGAAAAATTGACAACAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU466735 lncRNA upstream 36626 5759224 ~ 5762316 (+) True G406164
TU466941 lncRNA upstream 159076 5634748 ~ 5639866 (+) True G406354
TU466892 lncRNA upstream 244074 5552642 ~ 5554868 (+) True G406315
TU466513 lncRNA upstream 369297 5424589 ~ 5429645 (+) False G405987
TU466781 lncRNA downstream 27970 5830084 ~ 5831741 (+) True G406210
TU467011 lncRNA downstream 97543 5899657 ~ 5899988 (+) True G406417
TU466739 lncRNA downstream 126068 5928182 ~ 5929929 (+) True G406168
TU467021 lncRNA downstream 146584 5948698 ~ 5948928 (+) True G406427
TU466784 lncRNA downstream 211294 6013408 ~ 6015647 (+) True G406213
CI01000299_05778912_05790662.mRNA mRNA upstream 8187 5778563 ~ 5790755 (+) True CI01000299_05778912_05790662
CI01000299_05732790_05737401.mRNA mRNA upstream 61140 5732790 ~ 5737802 (+) True CI01000299_05732790_05737401
CI01000299_05619817_05725510.mRNA mRNA upstream 71503 5619704 ~ 5727439 (+) True CI01000299_05619817_05725510
CI01000299_05392812_05418070.mRNA mRNA upstream 380590 5392692 ~ 5418352 (+) True CI01000299_05392812_05418070
CI01000299_05331367_05364944.mRNA mRNA upstream 433965 5331201 ~ 5364977 (+) True CI01000299_05331367_05364944
CI01000299_05816534_05817445.mRNA mRNA downstream 14420 5816534 ~ 5817456 (+) True CI01000299_05816534_05817445
CI01000299_05836707_05843149.mRNA mRNA downstream 34187 5836301 ~ 5843594 (+) True CI01000299_05836707_05843149
CI01000299_05844429_05845510.mRNA mRNA downstream 42047 5844161 ~ 5845665 (+) True CI01000299_05844429_05845510
CI01000299_05864998_05873333.mRNA mRNA downstream 61520 5863634 ~ 5873515 (+) True CI01000299_05864998_05873333
CI01000299_05903841_05913302.mRNA mRNA downstream 99350 5901464 ~ 5915312 (+) True CI01000299_05903841_05913302
TU466818 other upstream 425363 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 871098 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1094317 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1293025 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1478801 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 435724 6237838 ~ 6300508 (+) True G406161

Expression Profile