RNA id: TCONS_00019458


Basic Information

Item Value
RNA id TCONS_00019458
length 5527
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_009716
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10329701 ~ 10345769 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTTTGTTTAAAGGGCGGTCCTTAGACTTCAGGAAATGGTTTCCAAGTGTTGTGCATGATAAGAAGGTATGATGGATGCCACTCAGCAGATTGAGGATCCCTTCtgtgaagaagaagaggaagaggaggataaAGGAGACCCAAAAAGAGAACAGTTAGCAACATTAAAGGTGTTTAAAAATGACCACATACCAGAGGCAGAATTTCCTCTCTATGTCGGAGAAAATATCTTGGGTCGGGATCCTGCTGCCTGTTCTGTTCTGCTTCCGGCCCGATCTGTGTCCAGTCTGCATGCTGTCATCTCCATCTCTGTATTTCACTCTAGTAAACGTTCTGATAATGGTGAGGCTGTGGAAGCACTTATATGGGACAAGGGAAGTTTAAATGGTACCAGAAAGGGCAGATTAAAGCTGACGCCTCAGGTACGATACGCTTTGACGGAAGGAGAGAGTGTGGTGCTCGCTGACGTGCCTTGTCAGTACATTGGCTTGGACATCTCCAAGAGAGATACATTGAAAACTCCAGAAAAAGGAGTGTGTGTAAAGGAGAAAAAAGAAAGTCCAGTGCTACCGAATAGTGACTCAAAGTTGAGGAAAAGTGTGCAGAATGGGTTAAATGACAAAGAGAAAACGGCTTTGCCTCCTGTGCCTTTATGGAGCCCTGAAGAAGAAGAACCCAGCATATGTTCACCACAGTCAGCTCACAAACAGCCTGAAATCACCCTGGTGCCTGAATCAGACTCCGATGGAGAGAGCGCTACAGATGAGCGGAAAGATTTTGTTTCAGACTCTGCGTCATCTTCTAATCTGTCTAGTTCCGCAAGTTCATCCTTCCTGACGCCTGCAAAAAAAGTAATTCCAGAGAGTGAGGATGAGAGCTCATTCACTCCATCTTCTGCCTCAGTCAACCGATTCAGACGGAGTGAAAGTAACTGTGAACCCAGTTCAAACTCATCTAAGCATGGCCCCTTGGCCCTAAACTTGGACAGTGGCACTGATTTTGAGGAAGAGGAGATGAAGACAAGCAAGACTGAACCATTGGCTACACCAGAAGTAGCTGCAAGAATAGAGCCAGTATCTTTGGCAGAATTTCATATGGACAGTGatactgatgttgaggaagaggagCTAGAGACAGATAATGCTGGTCCAGAGGCTCAGGTAGCTAAGAAGTCTGTAACCTCAGCTGGTCTACGTGTAGATAGTGATACTGATGTTGAAGAGGAAGAGAATAACAAAACCGAACCAGAGGCTCAGATTGAACAATCTCCAAAGGTGGGTCCAGTATCTTCAGGAGATCTTCATTTGGAAAGTGATACTGATGttgaagaagaggaggaagacaAAAGCAAACCTGATCCAGTAGCTCAGACTGAAACTCCAAGGTTGGCACCAGTCTCTTCAGCAGATCTTCATATAGACAGTGATACTGATGTTGAAGAAGAGGAATCGGATGCAAGTAAGGCAAAACCAGAGGCTCACAACGCAGTAACTCTTGATAAACCTGCACCTTCTCCTGGTCTTCATATAGACAGTGACACTGATGTAGAAGAAGATGAGGAAGAGAAAAGCAAGACTAAACAAAAGGCTGAAATAATTAAATCAGTAGCTTCAACGGATCTTCATATGGACAGCGatactgatgttgaggaagaaGAGCCAGAAGCAAGTAATGCTAAGCCAGGGGATCTTGATAAATCTGAATCTTCAGTTGGACAGTGTCATATGGACAGTGATACTGATGTTGAAGATGATAATCCTGTGCAGGTTCCGCAACCCATTGGAAAGGGAATTGATGTCAAACCTGCTACGTCAACTCCAGGGACAGAGCTTAACATGGATAGTGACACAGATGTGGATGAAGAGAATGAGGATAAGGAAAAGACCAAAGATTATCTGTCAAACGGTGGAACAGATGATGAAGATCCTTTTAAACCTGTAGCAAGAAAAACTGTGAAGGTTTTCAAGAGTCAGGAGGCCTCTGGTGGAGGTGATGAAGGAGAGCAGTCTGAAGGGAGCATCCTTAAAAAACAAGATCAACATTCCCAAGCAAAGGCTAGTCTTGAGGAACCAACACAAGCTTTTGGCCACCTTGAAGATGACTGGGACTTTATACCCACACAAGCATATGGAGCTGCCAGTACTAGTGCTGTTCTAAAGCCAAAGCGGCTTGATCTTGAGGCTACACAGGCATATGGaatagagacagacagagaggagGAACAGGAGGAGCCACTGAGCCATATCCAACCTTACACTAACCTCTCTACTGCTGAAACTCAACTCATCCCTGTTGCAAAGCCTGGTGATTATGctgaggaggaggatgaagagaCACCAAATGACTCTCACCTCTCCACAGCAGACACAGTAATTATTGCCAGCACCCCGAGAAGAGAGGAGCAGACTCAGGCCTTTTCTCTTTTCACAGCTCAAACGCAACTCGTCTGGGAGGGAGAAGGCAAAGAAGTTGATCAAAGTGAGCCCACCCAGCTGATAGAAGCTGAATCAAATGATGAAATGCAGGAGGGTGAAAATGAGGAAATGATTAAACAAGGGATGAAAACCCATGGTACCGGAGCAGTTCAAAATAGTAAAAACTCCAGCTCCTATCTTATAATTCCTGAAACTCAGCCTATGTGTGAGGATGAAGAAGCAATAGCTGCAGATCTGAGTGGGGATGAATTTCAGAAACCAAGTATTAGAAAACAGGATAAGAAATATGATACTTCACATTATGATAAAAACATCCCCAGCTCCCATGTCACTCTAGCAGAAACACAACCAATGTGTGATGATGATGAATTACCAGGTCAGGATGATGTATTGAGCAGTGTTCAAACAGAAAAACATGTCAGTTCCCATATTGCCATTGCTGAAACACAACCTATGTTTGAGGAAGAAGAGGTGCAAGATGATGACCTGAAAACTGAGGCCAGCAGAAGACATACTGACAAAGATGAACCTGTGCAATATACTGAAGAAGCTTCGACCTCTGGTTTTTCCATTTCCAAAACACAACCTGTTTGCGGAGAAAATGTGAGACAGGAGCTCAGAAGCAAGACATCTAGCAGAAGATCATGCAGGGGTCTATCAAAAAAAGGTAAGGATGTCCCACTGCCTGATGAAGCTGTGTCCAGTCCTGCTATCACAGAAACGCAACCGATCTGCATGGAAGAAAAAGCACCAGATGACAATCTTAAGGGTGAAGTCAGCTCTGGGAGTACAAGGCAACAAGCAGGTGAATTCAAGTCTATAGAGCTTGCTGAAACAGAGCCTATAAGTGATGAACAGCAGGCACCAGGAGAAGATATGCCTGATGCGGCTAGACCCAGGCGGATAGATGAAGATAACTCCATAGAGTTTCAAAAGCCCTCTATCTCCCATTTCACCATAGATGAAACGCAGCCTGTGGTTGAGGAAAATGAGGGACATGAGAAAATGTTCAGCAACAAGACAGCAAGCAGAAGGTCATGCAGAGGAAAGGCGAAGAAAGAAGAGGAGGTTTCACAAACTGCTGAGACTGCTGAAAACCAACCAATTCCTGAAGAACTTATTGAAAGAGCTGAGCTGAATAGTGAAGTCAAATCCAGGAGATCCCGCAGGACAAGACTTATTAAGGAAGAGAAGGTTCCACAACCTTCTGATGTGGTTATCGGTTCTGTTTCCACCATATCAAAAACGCTGTCTGTTTATGAGGATGAGACTGAAAGAGATGAAGATCTGAGTGTGATTAGATCCAAAAGATCTTGCAGAGGACGACAAAAAGATGAAGGTGAACCTCCAAAGGCTGCTGAACTAAACGCTGGTCTCACGGTGGTTGAAGCACACCATATGTTTGAGGAAAATGCTCAAGAAGAACCTAGTAGCAGAACTAGCAGGAGACAAGGGAAAGATAAGGCAAAGGAGGAGAGTGTAATACCTGCATCTAGTAAAGTCCAAGTTAAAAGTAGAAAAGTGCAGGATGGAAAAAGAAAGAGGGGGAAAGAATTGTCTGAGGATGAGGTAGAAAGTGAAGAGGAAAAAATCATAAGGAAAGGAACCAGAAGaactggtttgaaacaaaagTGTAGTGAAAAGGAAGAAGAGGAAAGCGTGGAGGAGAGGAATGTCCaggaagagaaagaaaaaatgaagAAAGAACAGGTGGAGACAGAGAGACTACAGAAGGAAGAAAATGAGAGAAATGAGCAAGAACATGAAGAGAGTGAGAGAGCTGAAACTGAAAGACAAAAGCTAGAACAAGAGCAGAAAGAACAATTGAAAAGGGAAGAAGATGAAAAAAGACAAGAGAATGAAAGAATACAGAGGGAAAAAGATGAAGAAAGAGAAGAGAAGGAAAGGTTGGAGAGGAAGAGAAACGAGCAAGAAGAACAAAGACAAAAAGAGGAGGAAGGAATTCAAAGAGATAaggaacaaaaagaaaatgaaatattaCAGGCAGAGAAGGAACAATTAGAAAAGGAGCGGCAAGAAAATGAGGCAAGAGCACAAAAAGAAAGAGATGAGGGGAGCCTTAAGAAAGGACAAAAGAATAAGCAGTTGGACAAGAACAAATCTGAACTAGAACCTCCTCTACTTCCTCCAACCAGGCGATCACGCCGCTGTTCAAGCTCCTCTCTGAATTCTGATCAGTCTGCAACCTCACAACAGGAGCCAACCAGCCAGAGGGGTAGAGGGCGGGGTAGAGGACGGGGCCGAGGGAAACAGACAACTGGCGAGCAGCCCATCAGTGCTAGACAGTCTAGCCGTAGAGGTCCAGCTTTTGAAGTCGCAGACACAGAACAAGACTCCAGTTTAACAACCCGATCAAGATCTCGCTCCAGTTCTAGAAGTTCTGAGAGATCTGCTAATAGTGTCCAGTCCTCAAATCAAGGAACAAGAGGACGAGGAAGAGCCAGGAAGAGTGTGAATCTACCACAACCTGAGGAAGTTTCCCAGACTAAACCTTCTGAAAGAGGCAGGGGGAGAAGAGGCAGGACTTCTGGTGTGGAAAATGTAGACGTCGGAATGAGCAATGAGCTTAAACAAGATGCGAAGATGGTTGAAGACAATACTGCTGTTTCCCAAACCAACAGCAGAGGTCGCAAGAGAACAGCCATCACAAGCACTACTGCAGAAGAGGCTCTTTCTCCCACACCCAAGACTCCACGGCGCTCGCTGGCCAGTCAGGCACACAAGGTGTTGTTCACTGGACTGACAGATGAGAGTGGAGAAAGAGTGGTCTCTCGGTTGGGTGGAACTCTGGCAAAAGGGGTAAACGATATGACTCACTTGGTGACTGACAAGGCAAGACGCACTGTTAAATTTTTGTGCGCTGTTGCCAGAGGGGTACCAATCGTGACTCCTGACTGGCTAAAGAAGGTGAGACAATCATTATTGATTCAAATGATGTCAATCCAAAATTGCATAGAAATATCTGAAAATTAGTGAAAGTATTACATTTTTTCATctgacaaacttttttttaagtaaactgcttattcaatatttaaaaaatattggcaTTTGTTACATGTCAAGTAAT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-060810-185 Predicted to be located in chromosome. Orthologous to human MDC1 (mediator of DNA damage checkpoint 1).

Ensembl:

ensembl_id ENSDART00000172845

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021892 lncRNA upstream 312988 10012335 ~ 10016713 (+) False XLOC_009712
TCONS_00021893 lncRNA upstream 312988 10013039 ~ 10016713 (+) True XLOC_009712
TCONS_00019448 lncRNA upstream 607563 9717781 ~ 9722138 (+) True XLOC_009708
TCONS_00021891 lncRNA upstream 801395 9526107 ~ 9528306 (+) True XLOC_009704
TCONS_00021890 lncRNA upstream 801480 9526080 ~ 9528221 (+) False XLOC_009704
TCONS_00021894 lncRNA downstream 35719 10378331 ~ 10379821 (+) True XLOC_009718
TCONS_00019461 lncRNA downstream 45107 10387719 ~ 10389787 (+) True XLOC_009719
TCONS_00021684 lncRNA downstream 274742 10617354 ~ 10617686 (+) True XLOC_009724
TCONS_00019471 lncRNA downstream 470184 10812796 ~ 10813628 (+) True XLOC_009726
TCONS_00019474 lncRNA downstream 515623 10858235 ~ 10859866 (+) False XLOC_009727
TCONS_00019456 mRNA upstream 2081 10318893 ~ 10327620 (+) True XLOC_009714
TCONS_00019453 mRNA upstream 44827 10264286 ~ 10284874 (+) False XLOC_009713
TCONS_00019454 mRNA upstream 45239 10264601 ~ 10284462 (+) False XLOC_009713
TCONS_00019452 mRNA upstream 543442 9779680 ~ 9786259 (+) True XLOC_009711
TCONS_00019451 mRNA upstream 551773 9762261 ~ 9777928 (+) True XLOC_009710
TCONS_00019460 mRNA downstream 3665 10346277 ~ 10369298 (+) True XLOC_009717
TCONS_00019462 mRNA downstream 70939 10413551 ~ 10422490 (+) False XLOC_009720
TCONS_00019463 mRNA downstream 70942 10413554 ~ 10422488 (+) True XLOC_009720
TCONS_00019464 mRNA downstream 80224 10422836 ~ 10428899 (+) True XLOC_009721
TCONS_00019465 mRNA downstream 87158 10429770 ~ 10475814 (+) True XLOC_009722
TCONS_00019457 other upstream 5036 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 36764 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 771598 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019442 other upstream 802492 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019438 other upstream 1092455 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019473 other downstream 498552 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019483 other downstream 899948 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019500 other downstream 1358034 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019511 other downstream 1898878 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 1957557 12300169 ~ 12300286 (+) True XLOC_009755

Expression Profile

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