RNA id: CI01000299_06396938_06400105.mRNA



Basic Information


Item Value
RNA id CI01000299_06396938_06400105.mRNA
length 1654
RNA type mRNA
GC content 0.37
exon number 2
gene id CI01000299_06396938_06400105
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6396938 ~ 6401342 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGTTGTTGAAAGTTGCCGTGACCCGCGTTCAGACCCGCGAGCACCTGTTAATCCACGCAGTGATTACCCAGAGTGCTCTCGAGTGGCCGGCGCTTCCTTTCACAAGCATCCGCACGTACTGAGATATGTTGGGAAATTCTTCAGGAAACATGGGTCTGTAGACAGGGCCATTGAAATACTAAAGAAAGTTCTTAAATCAACAAATTCATGCTTCATTCATCATCATTTAGGAGTGTGCTACAAGAACAAGAAAATTAAATTAAACAAAGAAAAACGGGGCAAGTCTGAGATAGACGATATTCAAAATCAAAGCATCTACCACTTAGAAAAGGCAACTCGCCTAAAACCTTCCTTCATCTTTGCCATGAGTGAGCTCGCAGTTCAGTATGGAGAGAAAAGCATTTACGACAGCTAGAAAGAATAATGAGCACCTGAGTGAGGTCAGTTTTGACTATGCTCAGTTCCAGCAGTACAGTAAACGATGTGAGGATTTAGCAATCAAACACTACAAGGAGTGTTGGGCAGTGTATCCACATACCAGTGAGGGCAGGAAAAGTGCTTGGAAACAAAAGGAAATTGCTCAGAAATGCATCAGGTGTAACCCAAATGATCAGAAGCTTTGGGAAATACAGGAATTATTTCAGCAAGCAAAAGATGAGATGTTAGGCGACACGAGAGCGGGGCTAAGCCTTCAGGCAATGAAGAGGATGATAAACTTTGTGAATCTTTTTAGTAATATTAACTTTCTACAGTGATGTATAATTAGTTATTTAAAAAAAAACACTCATCCTCATTTCCCTATTTATGTGCACAGAAAACAGGTGCATACAGACAAATATTTGTTCTTGTTTTTCATTCTAATGTTGATAAATCTGGATTATTTTAAAGAATCGAGCATGTGCTGACAGCTAGTAATTTGTCCAAACCATGTCCATTTAACTTTACAACCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTTCATCCGTCCCCTTACTCTTTCAGTGTAAATTTCAAAACACTTTATTGGCATGATTTTTTTATACATATAATATTGCCAGAGCACTAATACACACAACAAATGAATAATATCTCTCTCACACTCTTTCACCAGAGCATGTGCCGCAAGATCTTTAAGTGAAGCAAAGTGTGTGTGCCACATCTACAGGCTGTAATTTTTCATGAATTTTTTACTATTGTTACTTAGAAATAATTAATACGTTTATAGTGTCTCTTAGTTATTCCATGTATAATAATATAGTCTACATTTTAAAAATTGAATGAAACATGAAAACATTCATATATGCAGATTTAAAATGGTTAATGAATGAGACCTAAAGGTAACAAGTGACAATAGTTATTGTTTTTTACCTTGTTACGAATCTGTTTGAATTATTCTTTTGTTACTATTATGGAAACATTGTGTTTTTGTGGGGAAAAACTAATGTATTAAAATGTATTAAAACAGATAACATAAAAAATCTGTCCTAACAAATTCTGTGCAGTTTGTGCTCTTTGTTCAAATAGCCTCTCCTTTAGTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU467088 lncRNA upstream 4582 6392080 ~ 6392356 (+) False G406494
TU467090 lncRNA upstream 4582 6392148 ~ 6392356 (+) True G406494
TU467074 lncRNA upstream 73315 6323185 ~ 6323623 (+) True G406480
TU466743 lncRNA upstream 85239 6310408 ~ 6311699 (+) True G406172
TU466709 lncRNA upstream 110512 6279419 ~ 6286426 (+) False G406142
TU467131 lncRNA downstream 139920 6546125 ~ 6546203 (+) True G406532
TU467132 lncRNA downstream 139920 6541262 ~ 6541985 (+) False CI01000299_06541306_06541820
TU467133 lncRNA downstream 139920 6546082 ~ 6546203 (+) True G406532
CI01000299_06322253_06326504.mRNA mRNA upstream 70376 6322253 ~ 6326562 (+) True CI01000299_06322253_06326504
CI01000299_06312445_06318421.mRNA mRNA upstream 78517 6312040 ~ 6318421 (+) True CI01000299_06312445_06318421
CI01000299_06269853_06274289.mRNA mRNA upstream 122545 6269602 ~ 6274393 (+) True CI01000299_06269853_06274289
CI01000299_06233485_06239858.mRNA mRNA upstream 157036 6232572 ~ 6239902 (+) True CI01000299_06233485_06239858
CI01000299_06223295_06227054.mRNA mRNA upstream 169752 6222892 ~ 6227186 (+) True CI01000299_06223295_06227054
CI01000299_06416707_06422267.mRNA mRNA downstream 15365 6416707 ~ 6422648 (+) True CI01000299_06416707_06422267
CI01000299_06424909_06425694.mRNA mRNA downstream 23469 6424811 ~ 6425733 (+) True CI01000299_06424909_06425694
CI01000299_06430810_06434834.mRNA mRNA downstream 26709 6428051 ~ 6435178 (+) True CI01000299_06430810_06434834
CI01000299_06439603_06455258.mRNA mRNA downstream 38261 6439603 ~ 6455462 (+) True CI01000299_06439603_06455258
CI01000299_06458969_06464458.mRNA mRNA downstream 56733 6458075 ~ 6464695 (+) True CI01000299_06458969_06464458
TU466732 other upstream 96430 6237838 ~ 6300508 (+) True G406161
TU466818 other upstream 1023359 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1469094 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1692313 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1891021 4505404 ~ 4505917 (+) True G405866

Expression Profile