RNA id: TCONS_00019464


Basic Information

Item Value
RNA id TCONS_00019464
length 3569
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_009721
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10422836 ~ 10428899 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTCATTCTGCaaagccagagagagagagagggagggagagagagagatcttGTTATTGTGTAGCTGCTAGTTCAGCACTGTTAGCTGCAGTCTCTGCTCTGCTGTACCAAGGGCTTTTGGCCATGCATTTACCCAGACTCACTGTGTTGTTGATCTCTGCAGTGCTGGTTAATGGTGGTGTAGTCCGGGCAAGTTCCCACGCAGATCTCGATCCAGGCTTCCTTCAGTGTCATGACTGTTTTTTCAGGGGCTCGCCTCCACAGGCACTCTCTGATGTGGGTTTGGAGCAGAGATGTCACAGACATCTGACCGGACGGCCTTTTGCTTCACTGTTTAACACCAACTGCCAGAGCACAGTCTTCACAGCACTTCACCTCAGCTTGAATAATGGATGGGGCAGAGGAGAGGAGAGCACGGAAGCCCAAGAAGAGATCAATGATGATTCCCATGAGGCCATCCCAGCACTTTACAGAGAAACCTCAGATGAGACTCCATCATCCTCACCGTTCCTCCAGTGGGATTCTCTGACAGCCGAGTTGATCCGGAGTTCCATCATAGCGAAGTGTTCAGAGAATGGCGGGGAAATTTATGTGCAGAATGGTGTGGGCGGCTTTAATGAATGTGGAGGGAAACCGATGTGGTCAGCACTGTGTTGTGCTGCTTCAGGCGGAGATGGTAGCTTCAGTTTTGGGCTAGTGAAGGAGGGGGATGTGAAAGTACTCAGCATTAAAGCACTAGAAGAGCGAATTGGTGTTACAGGTTTGTTTTCAGGAGGCTGTGGTGAAATAGGACATGAGATGGAAGAGGAACTTGCTTCCATTTTGAAGAAGGAGATGAATAGCATTGAAACACCCAATTCTGACGCACAAAGCGAGGAACACATTAGCAAGCGTAACACTCAGGAAGCAGAATCATCAGAATCAATCGATGAGGAAGTGAACTCAGAGTCTTCAGAATCTTCCTTGGGTTCAGACATGAACATTCAGGAGGACACCGAAGAAATTGAGCGCTCCGAATCAGTTCTTCTCTACATTTTGTCCACCATCGTCTCTCTTCTTTATGCCCCATTCTCTCCAATCGTAAACATAGCCACTAATCTTCCTTTCCAGCTGGGTTATGTTCTCCAGGAAGATCTGGCTGTTCTGGCCTCGGTGCCTGTTGACAGCTTCACTTTGGTCAACAATCTGGGCTCGGGAGTGTGTTCTGGAGTTTCATGCATCTTGAACACCTTGTACCAGACTGGAGAAACTAGCGTGTGCACCATGTACGCCTGTCTCTCTCCACTAGCTGGCAGCTTAGGGCTGGCATTCCAGGAGGGATTCATAGGAACAGGGACTCTGGCCTCAGATGCCGTGGGTATCATGACAGGAACAGTGGGGAATGGTTTTAGTATCATTAGAACTGTTCTTGGGTCAGTCTGGGATGGCACGGTAGATTACCTATGGGCCGTATCCTCAGAAATGGGCCACCAGGTGTCAACTGTAGGCAGTGGGATTGGCAAACTTACCTGGAGAAGTGGTAAAGGGGTGGGTCACGTGCTTAACTTTGGTGTGTCCATCGTAGGTGGAGTGGTGGAAAATACTGTAGACAATGTTCTGGAAGCTTTTGGAGGAAGCTCAGGGGAGTCATCTCAATTGCAAACACCTGAGTTGCTGACATCTGAAGTGGTTGGTGAATAGATttgaatatatgtgtgtatggttGTGTTAGCTATATCTTATTTGCATATTACACAACAAATAAAGCGCAACACCACTTATCCACTTTTGTTGCAGCCTTGGTTTTGGAagaattttcccttttttttttttttttaatcaacaaaaaatgtaaataaatgcaaagccATGAGCCAAACCAACCAACTGTGTAGGTTTGTTACCACttaaaaatgattcaaatgaaaaGTACATTAAAATCAGACAATAAGACAAATGTAGAAGATTACTAAACAGCTTTTTAGAGGGACTGAACTACAACTCCATAAAGTACCACAAATGacataattttaaacaaataattctaaaattcttcatttaaattgttgaaaatatatatttgatgggTAATACAGATTTACCCTCTGTGATTTCTGCTGATAGATATTAATCTTAAAAGAAAAGCTAGAATATGTGGACTGATGGCTTCAACAAAATCATATGCCATTGATTAACAACTTAGTAGCTCAGTGTAGGTCTGTCTTTAATAATATCATTAGACACCAGTTTTCCTATGAAGAAAATGAGTGGGACTTTTAGTTCCTGGACCTACAGTAGTTCTAGCACTCTATTGTGTCCAGCAGACTGAATATTGACCATTTGGCGTGTGGATTTAAATCATGATACTTTATCATCTCAAATGGAGAATCATCTCAATTGCAAACACCTGAATTGCTGACATCTGAAGTGGTCGGTGAATAGATTTAAATGAGTGTATATGGCTATATGTTAGCTTATTTGCATATTATACTACAAATAGAGTGCAACACCACTTGTCCACTTTTGTTGCAGCCTTGGTTTCAGAAGAACTTtcctcatttatttttaatggatataaagtgaaataaaattgaaagccataaacaaaacaaatcagtcAACCGTGTGGGTTTATTACCACTTTAAAAACTTTAATTCAAATGAAAGGTACAtaaaaatcagacaaaacaaacGTAGAAGACTATACTAAACCGCTTTAAAAAgacaattaaaaactaaaattattcatttaaataatagaacacacacacatacagtatatatatatatataaaaaaaaataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataacgtgtGTTGCTTAGTGCCCCCAATAGTACTGatgtacagccatatcgcactgctactcgtgtgatattgcgtttatacaacagtttgacggcataattgtgtatataaatacaaaatcaaacatggagagtctcaaaaacgtttgtatgaggaactactttcgtTCGCATTGGATTCAAGTAATTAGCTGACAGTTAACAGTTGAAGAAGCATCTTTTacatctgtagtgtctgctttttgctggttgtatgtaaaaggctgtacgggtgctgatatgacttaaatatatcacggctatcagccaatcagattcgagaaccagacagaactgttgtataaaaaaaaaaaaaaataaataaatataaatataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagaaacttGTACATTTTGCCTTAAATGGTGGAAGACCAATATTCACctttaaagttttcttttttttttttttttttttgagggttcacactgtttttgttttttaagaaatgAAAGGTTCAGGGAGATATATAAGTGTTTCAAGGTGCTGCTGAGCGATGTTTGTTATGTGTCATAAAAATGATGTAACTGTTATGTGTTTATGCCATTTCATTTGAATTACAAATGCCTTGTTATGCCTTGGTTTACATGCTGCAATAAAACCTCTTCTCTGT

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0007420 brain development biological_process
GO:0031011 Ino80 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1818 Acts upstream of or within brain development. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Is expressed in brain. Orthologous to human INO80E (INO80 complex subunit E).

Ensembl:

ensembl_id ENSDART00000161568

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019461 lncRNA upstream 33049 10387719 ~ 10389787 (+) True XLOC_009719
TCONS_00021894 lncRNA upstream 43015 10378331 ~ 10379821 (+) True XLOC_009718
TCONS_00021892 lncRNA upstream 406123 10012335 ~ 10016713 (+) False XLOC_009712
TCONS_00021893 lncRNA upstream 406123 10013039 ~ 10016713 (+) True XLOC_009712
TCONS_00019448 lncRNA upstream 700698 9717781 ~ 9722138 (+) True XLOC_009708
TCONS_00021684 lncRNA downstream 188455 10617354 ~ 10617686 (+) True XLOC_009724
TCONS_00019471 lncRNA downstream 383897 10812796 ~ 10813628 (+) True XLOC_009726
TCONS_00019474 lncRNA downstream 429336 10858235 ~ 10859866 (+) False XLOC_009727
TCONS_00019475 lncRNA downstream 430530 10859429 ~ 10862142 (+) True XLOC_009727
TCONS_00021895 lncRNA downstream 490010 10918909 ~ 10919965 (+) False XLOC_009728
TCONS_00019462 mRNA upstream 346 10413551 ~ 10422490 (+) False XLOC_009720
TCONS_00019463 mRNA upstream 348 10413554 ~ 10422488 (+) True XLOC_009720
TCONS_00019460 mRNA upstream 53538 10346277 ~ 10369298 (+) True XLOC_009717
TCONS_00019459 mRNA upstream 77067 10330178 ~ 10345769 (+) True XLOC_009716
TCONS_00019458 mRNA upstream 80224 10329701 ~ 10342612 (+) False XLOC_009716
TCONS_00019465 mRNA downstream 871 10429770 ~ 10475814 (+) True XLOC_009722
TCONS_00019466 mRNA downstream 128605 10557504 ~ 10638020 (+) True XLOC_009723
TCONS_00019467 mRNA downstream 295507 10724406 ~ 10734300 (+) True XLOC_009725
TCONS_00019468 mRNA downstream 347789 10776688 ~ 10820909 (+) False XLOC_009726
TCONS_00019469 mRNA downstream 347932 10776831 ~ 10798986 (+) False XLOC_009726
TCONS_00019457 other upstream 98171 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 129899 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 864733 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019442 other upstream 895627 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019438 other upstream 1185590 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019473 other downstream 412265 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019483 other downstream 813661 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019500 other downstream 1271747 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019511 other downstream 1812591 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 1871270 12300169 ~ 12300286 (+) True XLOC_009755

Expression Profile

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