RNA id: TCONS_00021684


Basic Information

Item Value
RNA id TCONS_00021684
length 333
lncRNA type intronic
GC content 0.35
exon number 1
gene id XLOC_009724
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10617354 ~ 10617686 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCCTtcgttttaaaaaaattcagtcCACATGAAAATGCATTGTGACGCACCATCAAGGACATGCCAAATCAACAGGGGGCGATTTAAAACCTTATGATGAATGAGTCATTTGCTCCGTGTTGGCCTATCGGTAGAGATGctcataactagggccagacggaatctgtggacgttttttgctatttctgcggagaattttggtaaaagtctgcggatttctgctgaattattttgggagtatcataactaaaaccttaatatatgaaaaaaaaattgtcttttaaacttttatttaatttttaaaatgcaaatctaattagatccaatttatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019461 lncRNA upstream 227567 10387719 ~ 10389787 (+) True XLOC_009719
TCONS_00021894 lncRNA upstream 237533 10378331 ~ 10379821 (+) True XLOC_009718
TCONS_00021892 lncRNA upstream 600641 10012335 ~ 10016713 (+) False XLOC_009712
TCONS_00021893 lncRNA upstream 600641 10013039 ~ 10016713 (+) True XLOC_009712
TCONS_00019448 lncRNA upstream 895216 9717781 ~ 9722138 (+) True XLOC_009708
TCONS_00019471 lncRNA downstream 195110 10812796 ~ 10813628 (+) True XLOC_009726
TCONS_00019474 lncRNA downstream 240549 10858235 ~ 10859866 (+) False XLOC_009727
TCONS_00019475 lncRNA downstream 241743 10859429 ~ 10862142 (+) True XLOC_009727
TCONS_00021895 lncRNA downstream 301223 10918909 ~ 10919965 (+) False XLOC_009728
TCONS_00021685 lncRNA downstream 534090 11151776 ~ 11166712 (+) False XLOC_009730
TCONS_00019465 mRNA upstream 141540 10429770 ~ 10475814 (+) True XLOC_009722
TCONS_00019464 mRNA upstream 188455 10422836 ~ 10428899 (+) True XLOC_009721
TCONS_00019462 mRNA upstream 194864 10413551 ~ 10422490 (+) False XLOC_009720
TCONS_00019463 mRNA upstream 194866 10413554 ~ 10422488 (+) True XLOC_009720
TCONS_00019460 mRNA upstream 248056 10346277 ~ 10369298 (+) True XLOC_009717
TCONS_00019467 mRNA downstream 106720 10724406 ~ 10734300 (+) True XLOC_009725
TCONS_00019468 mRNA downstream 159002 10776688 ~ 10820909 (+) False XLOC_009726
TCONS_00019469 mRNA downstream 159145 10776831 ~ 10798986 (+) False XLOC_009726
TCONS_00019470 mRNA downstream 159430 10777116 ~ 10819773 (+) False XLOC_009726
TCONS_00019472 mRNA downstream 223477 10841163 ~ 10863041 (+) False XLOC_009727
TCONS_00019457 other upstream 292689 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 324417 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 1059251 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019442 other upstream 1090145 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019438 other upstream 1380108 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019473 other downstream 223478 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019483 other downstream 624874 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019500 other downstream 1082960 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019511 other downstream 1623804 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 1682483 12300169 ~ 12300286 (+) True XLOC_009755

Expression Profile

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