RNA id: TCONS_00019470


Basic Information

Item Value
RNA id TCONS_00019470
length 3309
RNA type mRNA
GC content 0.51
exon number 21
gene id XLOC_009726
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10776688 ~ 10820909 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACTGACTGCGCAACCATGGGGTATGGGCGATCGGACAGCTACCGCGTGGCCACCACGCAAGACAAAGATGAAAAAGGTTCTCCAAAGAAGAAAAAGGGGGCAAAGGATCTCGATGATCTGAAGAAAGAAGTTCCCCTTACAGAACACAAGATGTCAGTCGAGGAAGTATGCCGGAAATTTCAGACAGACATTGTTCAGGGTTTAACCAATGCAAAGGCCAGAGACTTTCTGGCACGCGATGGGCCAAATGCTCTGACCCCACCACCTACAACACCCGAGTGGGTTAAATTCTGTCGTCAGCTGTTCGGAGGCTTCTCCATCTTGCTTTGGATTGGAGCCATTCTCTGCTTCCTGGCCTATGCCATCCAGGCTGCAACCGAAGATGATCCAGCTGGAGATAATTTGTACCTGGGAATCGTCCTGTCTGCCGTGGTCATCATTACTGGCTGCTTCTCCTACTTCCAGGAGGCAAAGAGCTCCAAGATCATGGAGTCCTTCAAAAACATGGTGCCCCAGCAAGCATTAGTGATCCGTGAAGGGGAGAAGATGCAGATCAATGCTGAGGAAGTGGTTGCAGGCGACCTGGTGGAGGTCAAAGGTGGAGACCGAATCCCTGCTGACCTCAGAATCATCTCTGCTCATGGATGCAAGGTGGATAACTCCTCCCTGACTGGCGAATCAGAACCTCAGACAAGATCACCTGACTGCACTCATGATAATCCTCTGGAAACCCGTAACATCGCTTTCTTCTCCACCAACTGTGTGGAAGGCACTGCTCGTGGTGTTGTGGTCTGCACTGGTGACCGCACAGTGATGGGCCGCATCGCCACACTGACCTCAGGACTGGAGACAGGGAAAACACCCATCGCCAAGGAGATCGAGCACTTTATTCATATCATCACAGGCGTAGCCGTCTTCCTAGGCGTGAGCTTCTTCATCCTGGCCGTCATTTTGGGATACACCTGGCTGGAGGCTGTCATTTTCCTTATTGGGATCATCGTCGCTAATGTGCCTGAGGGTCTGCTGGCTACTGTCACTGTGTGTCTCACTCTGACTGCCAAGCGAATGGCTCGCAAGAACTGCCTGGTTAAGAATCTGGAAGCCGTAGAGACGCTGGGATCCACCTCAACGATCTGCTCAGACAAGACTGGAACTCTGACCCAGAATCGAATGACTGTGGCACACATGTGGTTTGACAATCAGATCCACGAAGCCGACACCACTGAAGATCAGTCAGGTGCGTCGTTTGATAAGAGCTCTGTGACTTGGGTGGCTCTGGCCCGTGTGGCGGCTCTGTGTAACAGAGCTGTGTTTAAGGCGGGACAAGACTCTCTGCCCATTCTCAAGAGGGACGTAGCTGGTGACGCTTCTGAGTCTGCCCTGCTTAAGTGTATCGAGCTGTCCAGTGGCTCAGTCAAAGCAATGAGAGAAAAGAACAAGAAAGTAGCCGAAATCCCATTCAACTCCACCAACAAATATCAGCTGTCCATCCATGAGACAGAGGACAATAATGATAACCGCTACCTATTGGTGATGAAGGGGGCTCCAGAGCGCATCTTAGACCGTTGTTCCACCATCATGCTGCAGGGCAAAGAGCAGCCTATGGACGAGGAGATGAAGGAGGCCTTTCAGAATGCCTACCTGGAGCTTGGAGGACTTGGAGAGCGAGTGCTGGGATTCTGCCATGTCTTAATGCCTGAGGACCAGTACCCGAAAGGTTTCGCCTTTGACACCGATGATGTCAATTTCCAGACAGACAACCTTTGCTTTGTGGGCTTGATGTCTATGATTGACCCTCCCCGTGCTGCCGTGCCTGATGCTGTGGGAAAGTGCCGTTCCGCTGGAATCAAAGTCATCATGGTGACAGGAGATCACCCCATCACTGCCAAGGCCATCGCCAAGGGTGTGGGCATCATCTCAGAGGGTAACGAAACTGTGGAAGACATCGCTGCCCGTCTCAACATCCCTGTCAGTCAGGTCAATCCCAGGGATGCCAAAGCCTGTGTTATACATGGAACAGATCTGAAAGACTATTCTCAGGAGCAAATAGATGAAGTTCTGCGAAACCACACTGAGATTGTGTTTGCCAGGACGTCTCCCCAGCAAAAACTTATCATTGTAGAAGGCTGCCAGCGACAGGGGGCCATCGTGGCTGTAACAGGTGATGGTGTGAATGACTCTCCAGCCCTGAAGAAGGCTGATATCGGCGTCGCTATGGGCATTTCTGGCTCTGATGTGTCTAAACAGGCTGCTGACATGATTTTGCTGGATGACAACTTCGCCTCCATCGTCACTGGAGTAGAAGAAGGTCGACTCATCTTTGATAATTTGAAGAAGTCTATTGCGTACACCCTGACCAGCAATATCCCTGAGATCACCCCATTCCTGCTGTTTATTATTGTCAATATTCCCCTGCCCCTCGGCACCATCACCATCCTCTGTATCGACCTGGGAACTGACATGGTACCTGCAATTTCTTTAGCTTATGAAGCAGCTGAGAGTGACATCATGAAGAGGCAGCCCAGGAACCCTATGAGAGACAAACTTGTGAACGAACGTCTCATCAGCATCGCTTATGGACAGATCGgtaTGATCCAGGCATTGGGTGGTTTCTTTGCCTACTTTGTGATTTTGGCTGAGAATGGTTTCTTGCCCTCGCTGCTTGTGGGGATCAGGCTGAACTGGGATGATCGCGCGATGAATGACCTGGAGGATAGTTATGGACAGCAGTGGACATATGAACAGAGGAAGATTGTTGAGTTCACGTGCCACACAGCGTTCTTCGTCAGTATTGTGGTTGTGCAGTGGGCTGATGTCATCATCTGCAAGACCAGACGCAACTCAGTGTTCCAGCAGGGCATGAAGAATAAGATTCTGATCTTTGGGCTGTTTGAAGAAACTGCTCTCGCTGCATTCCTCTCCTACTGCCCAGGCATGGATGTGGCACTCAGGATGTACCCGCTCAAGCCGAGCTGGTGGTTCTGTGCTTTCCCATACAGTTTCTTAATCTTTGTTTATGATGAGGTCCGAAAGCTGCTCCTGCGCCGGAACCCTGGTGGCTGGGTGGAAAAGGAGACCTACTATTGATCAGCAGCTCTTCCGTGCTCAAGTCCCCAACATCCTCCATTTGTTTCCATCTCTTCTCTCTTCCCCAAACCGAGACGCACAACCGTCCCCCTTTCCAGCCCTCCTTTCAGAGAGACAGCAGCTTTAACCCCCGAAAAGGAAAAACACACTCTCGCCCCACAATTTCCTATAATACTCTTTGCATGTATTTTCACACGGCTGTGTACATAAAGTCTACTAT

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0021591 ventricular system development biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0007626 locomotory behavior biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001212-8 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within locomotory behavior and ventricular system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural tube; pronephric duct; and skeletal system. Human ortholog(s) of this gene implicated in alternating hemiplegia of childhood; bipolar disorder; dystonia 12; and epilepsy. Orthologous to human ATP1A3 (ATPase Na+/K+ transporting subunit alpha 3).

Ensembl:

ensembl_id ENSDART00000190902

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021684 lncRNA upstream 159430 10617354 ~ 10617686 (+) True XLOC_009724
TCONS_00019461 lncRNA upstream 387329 10387719 ~ 10389787 (+) True XLOC_009719
TCONS_00021894 lncRNA upstream 397295 10378331 ~ 10379821 (+) True XLOC_009718
TCONS_00021892 lncRNA upstream 760403 10012335 ~ 10016713 (+) False XLOC_009712
TCONS_00019474 lncRNA downstream 38462 10858235 ~ 10859866 (+) False XLOC_009727
TCONS_00019475 lncRNA downstream 39656 10859429 ~ 10862142 (+) True XLOC_009727
TCONS_00021895 lncRNA downstream 99136 10918909 ~ 10919965 (+) False XLOC_009728
TCONS_00021685 lncRNA downstream 332003 11151776 ~ 11166712 (+) False XLOC_009730
TCONS_00019484 lncRNA downstream 455886 11275659 ~ 11283602 (+) True XLOC_009731
TCONS_00019467 mRNA upstream 42816 10724406 ~ 10734300 (+) True XLOC_009725
TCONS_00019466 mRNA upstream 139096 10557504 ~ 10638020 (+) True XLOC_009723
TCONS_00019465 mRNA upstream 301302 10429770 ~ 10475814 (+) True XLOC_009722
TCONS_00019464 mRNA upstream 348217 10422836 ~ 10428899 (+) True XLOC_009721
TCONS_00019463 mRNA upstream 354628 10413554 ~ 10422488 (+) True XLOC_009720
TCONS_00019472 mRNA downstream 21390 10841163 ~ 10863041 (+) False XLOC_009727
TCONS_00019476 mRNA downstream 98479 10918252 ~ 10991240 (+) False XLOC_009728
TCONS_00019477 mRNA downstream 143829 10963602 ~ 10988152 (+) False XLOC_009728
TCONS_00019478 mRNA downstream 152960 10972733 ~ 10985195 (+) True XLOC_009728
TCONS_00019479 mRNA downstream 209989 11029762 ~ 11142797 (+) True XLOC_009729
TCONS_00019457 other upstream 452451 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 484179 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 1219013 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019442 other upstream 1249907 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019438 other upstream 1539870 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019473 other downstream 21391 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019483 other downstream 422787 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019500 other downstream 880873 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019511 other downstream 1421717 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 1480396 12300169 ~ 12300286 (+) True XLOC_009755

Expression Profile

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