Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019471 |
| length | 659 |
| lncRNA type | retained_intron |
| GC content | 0.43 |
| exon number | 3 |
| gene id | XLOC_009726 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 10776688 ~ 10820909 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006883 | cellular sodium ion homeostasis | biological_process |
| GO:1902600 | proton transmembrane transport | biological_process |
| GO:0021591 | ventricular system development | biological_process |
| GO:0036376 | sodium ion export across plasma membrane | biological_process |
| GO:0007626 | locomotory behavior | biological_process |
| GO:0030007 | cellular potassium ion homeostasis | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006813 | potassium ion transport | biological_process |
| GO:1990573 | potassium ion import across plasma membrane | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005391 | sodium | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0008556 | potassium transmembrane transporter activity, phosphorylative mechanism | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-001212-8 | Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within locomotory behavior and ventricular system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural tube; pronephric duct; and skeletal system. Human ortholog(s) of this gene implicated in alternating hemiplegia of childhood; bipolar disorder; dystonia 12; and epilepsy. Orthologous to human ATP1A3 (ATPase Na+/K+ transporting subunit alpha 3). |
| ensembl_id | ENSDART00000169057 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021684 | lncRNA | upstream | 195110 | 10617354 ~ 10617686 (+) | True | XLOC_009724 |
| TCONS_00019461 | lncRNA | upstream | 423009 | 10387719 ~ 10389787 (+) | True | XLOC_009719 |
| TCONS_00021894 | lncRNA | upstream | 432975 | 10378331 ~ 10379821 (+) | True | XLOC_009718 |
| TCONS_00021892 | lncRNA | upstream | 796083 | 10012335 ~ 10016713 (+) | False | XLOC_009712 |
| TCONS_00021893 | lncRNA | upstream | 796083 | 10013039 ~ 10016713 (+) | True | XLOC_009712 |
| TCONS_00019474 | lncRNA | downstream | 44607 | 10858235 ~ 10859866 (+) | False | XLOC_009727 |
| TCONS_00019475 | lncRNA | downstream | 45801 | 10859429 ~ 10862142 (+) | True | XLOC_009727 |
| TCONS_00021895 | lncRNA | downstream | 105281 | 10918909 ~ 10919965 (+) | False | XLOC_009728 |
| TCONS_00021685 | lncRNA | downstream | 338148 | 11151776 ~ 11166712 (+) | False | XLOC_009730 |
| TCONS_00019484 | lncRNA | downstream | 462031 | 11275659 ~ 11283602 (+) | True | XLOC_009731 |
| TCONS_00019469 | mRNA | upstream | 13810 | 10776831 ~ 10798986 (+) | False | XLOC_009726 |
| TCONS_00019467 | mRNA | upstream | 78496 | 10724406 ~ 10734300 (+) | True | XLOC_009725 |
| TCONS_00019466 | mRNA | upstream | 174776 | 10557504 ~ 10638020 (+) | True | XLOC_009723 |
| TCONS_00019465 | mRNA | upstream | 336982 | 10429770 ~ 10475814 (+) | True | XLOC_009722 |
| TCONS_00019464 | mRNA | upstream | 383897 | 10422836 ~ 10428899 (+) | True | XLOC_009721 |
| TCONS_00019472 | mRNA | downstream | 27535 | 10841163 ~ 10863041 (+) | False | XLOC_009727 |
| TCONS_00019476 | mRNA | downstream | 104624 | 10918252 ~ 10991240 (+) | False | XLOC_009728 |
| TCONS_00019477 | mRNA | downstream | 149974 | 10963602 ~ 10988152 (+) | False | XLOC_009728 |
| TCONS_00019478 | mRNA | downstream | 159105 | 10972733 ~ 10985195 (+) | True | XLOC_009728 |
| TCONS_00019479 | mRNA | downstream | 216134 | 11029762 ~ 11142797 (+) | True | XLOC_009729 |
| TCONS_00019457 | other | upstream | 488131 | 10324549 ~ 10324665 (+) | True | XLOC_009715 |
| TCONS_00019455 | other | upstream | 519859 | 10284258 ~ 10292937 (+) | True | XLOC_009713 |
| TCONS_00019443 | other | upstream | 1254693 | 9540033 ~ 9558103 (+) | True | XLOC_009705 |
| TCONS_00019442 | other | upstream | 1285587 | 9526107 ~ 9527209 (+) | False | XLOC_009704 |
| TCONS_00019438 | other | upstream | 1575550 | 9237132 ~ 9237246 (+) | True | XLOC_009699 |
| TCONS_00019473 | other | downstream | 27536 | 10841164 ~ 10856409 (+) | False | XLOC_009727 |
| TCONS_00019483 | other | downstream | 428932 | 11242560 ~ 11290883 (+) | False | XLOC_009731 |
| TCONS_00019500 | other | downstream | 887018 | 11700646 ~ 11703337 (+) | False | XLOC_009744 |
| TCONS_00019511 | other | downstream | 1427862 | 12241490 ~ 12245896 (+) | False | XLOC_009752 |
| TCONS_00019517 | other | downstream | 1486541 | 12300169 ~ 12300286 (+) | True | XLOC_009755 |
