RNA id: TCONS_00019474


Basic Information

Item Value
RNA id TCONS_00019474
length 845
lncRNA type sense_over
GC content 0.49
exon number 2
gene id XLOC_009727
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10841163 ~ 10863041 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTACAAGGAAGGTGTGTAACAGgggcaccttaaaataaagtgttaccctaaagCGCTACTGTTCACAAATACTTCATAAATACAGTCTGTTCTAAAGATGGGCAAGCTCGGCcatggagggctggtgtcctgcagagtttagctccaataaTCAATCACACTTGCTTGTAGCTTTCTTGACGATTCTGATTAGCCTAAGCTGTGTTTGGTTAGTGTTGTGGCCAAACTCTAGAGTACAGCAGCCCTCCAGGGCCGAGCTTGTCCGTCCATAGACTATTCAGTCATTTAAGCAATGTAATATTATTTCCCCTTATAAAGGAGCTGAGTCTTAGTTAGTCACCTACCTGACCGAttggtttttattttcataataaccTACCATGTCAACTTCCCAACTTTCAAAAACGGTGGAGTTTGTGATGGAGCTTTGGTTGTAGAAAGGTTGGATTTGTGTTGCAGCAATGTTCGGAAGATTGATGGGTCCACTTCCTCCTCTGAGCTAATGACATGAAAGGAAATGACATCACTGCGAAGCTCTGGTTCAATATCCGACTGCGGGTGCGAGCGGAGTATTCGGAGCATGAGTCGGCTCTTCGTGGAGGGGTTTCCTCAGACAAGCCGCAGCCGCTGGAGAGGCAGTTTGAGCTGTTCAGCCGGGCCAGTTTGCTGCTCCGCACTCGCGATCTGGGCTCTATTGTGTGTGACATCAAGTTCTCTGAGCTCACCAACCTGGACGCCTTCTGGGCGGATTACCTGAGCGGGGCGCTACTCGAGGCGCTGAAGGGGGTCTTCATTACGGACTCCTTGAAAAGGGCAGCAGGGCAGGAGGGTGTTCGGCTGCTG

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006915 apoptotic process biological_process
GO:0008625 extrinsic apoptotic signaling pathway via death domain receptors biological_process
GO:0005730 nucleolus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019471 lncRNA upstream 44607 10812796 ~ 10813628 (+) True XLOC_009726
TCONS_00021684 lncRNA upstream 240549 10617354 ~ 10617686 (+) True XLOC_009724
TCONS_00019461 lncRNA upstream 468448 10387719 ~ 10389787 (+) True XLOC_009719
TCONS_00021894 lncRNA upstream 478414 10378331 ~ 10379821 (+) True XLOC_009718
TCONS_00021892 lncRNA upstream 841522 10012335 ~ 10016713 (+) False XLOC_009712
TCONS_00021895 lncRNA downstream 59043 10918909 ~ 10919965 (+) False XLOC_009728
TCONS_00021685 lncRNA downstream 291910 11151776 ~ 11166712 (+) False XLOC_009730
TCONS_00019484 lncRNA downstream 415793 11275659 ~ 11283602 (+) True XLOC_009731
TCONS_00021686 lncRNA downstream 501894 11361760 ~ 11376845 (+) True XLOC_009733
TCONS_00021896 lncRNA downstream 713323 11573189 ~ 11573798 (+) False XLOC_009736
TCONS_00019468 mRNA upstream 37326 10776688 ~ 10820909 (+) False XLOC_009726
TCONS_00019470 mRNA upstream 38462 10777116 ~ 10819773 (+) False XLOC_009726
TCONS_00019469 mRNA upstream 59249 10776831 ~ 10798986 (+) False XLOC_009726
TCONS_00019467 mRNA upstream 123935 10724406 ~ 10734300 (+) True XLOC_009725
TCONS_00019466 mRNA upstream 220215 10557504 ~ 10638020 (+) True XLOC_009723
TCONS_00019476 mRNA downstream 58386 10918252 ~ 10991240 (+) False XLOC_009728
TCONS_00019477 mRNA downstream 103736 10963602 ~ 10988152 (+) False XLOC_009728
TCONS_00019478 mRNA downstream 112867 10972733 ~ 10985195 (+) True XLOC_009728
TCONS_00019479 mRNA downstream 169896 11029762 ~ 11142797 (+) True XLOC_009729
TCONS_00019480 mRNA downstream 291833 11151699 ~ 11222825 (+) False XLOC_009730
TCONS_00019473 other upstream 1826 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019457 other upstream 533570 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 565298 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 1300132 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019442 other upstream 1331026 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019483 other downstream 382694 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019500 other downstream 840780 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019511 other downstream 1381624 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 1440303 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019518 other downstream 1520864 12380730 ~ 12380846 (+) True XLOC_009756

Expression Profile

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