RNA id: TCONS_00021895


Basic Information

Item Value
RNA id TCONS_00021895
length 653
lncRNA type sense_over
GC content 0.45
exon number 2
gene id XLOC_009728
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10918252 ~ 10991240 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGAAGAGAAGCAGGCCAGCTGAACATATACAGTGTTCAGTATCGACAAGGACAGAAATAACACTATAGTTGAGAACCGAGATATGCAGTTATATACGCTCGCAAACATGGTAAATACATGCCTTTGAGTGACAGATACCTATATGTTCGACAAGCAGATATACCAAATACTGTAGCTTAATACCAAAACGAACAGACAAACGTGAAAGTATCAGTGGAATAACCAGCGTTTGTCTTGTTTCAATCCGTCTATCcgcctgtgtgtgcgcgcgcgctggGAAAACACAGTCGCGTCTGCGTATCTATGCATGTTCATCCAAAGTACTACAAAAGAATAAGtggtttttataaaatgtaactgCGCTATTTAGTGAATAACCCGTTTGTGTCAGAAACCCCTGAACCACCGACGAAACCAAATGATTTAGCCAAGTGCGAAAAAGCCACAACTGCTCAAATTGCAAAGAAAAACTCAAATCAACAGCAAACAGAACATCTGAAAAGAACCAGACAAAAAGACGGATCATGTTTGTTCCTTTGCCGGTGCCGTTTGTCTTGCCGAGAACTGCCTCCGACCTCCACGCCTGGCGTCTCAAGTCCCCGCTGGCTCTCCGCTCACACTCCGGATCGATTCCGGGGCCGGCGGATCGAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019475 lncRNA upstream 56767 10859429 ~ 10862142 (+) True XLOC_009727
TCONS_00019474 lncRNA upstream 59043 10858235 ~ 10859866 (+) False XLOC_009727
TCONS_00019471 lncRNA upstream 105281 10812796 ~ 10813628 (+) True XLOC_009726
TCONS_00021684 lncRNA upstream 301223 10617354 ~ 10617686 (+) True XLOC_009724
TCONS_00019461 lncRNA upstream 529122 10387719 ~ 10389787 (+) True XLOC_009719
TCONS_00021685 lncRNA downstream 231811 11151776 ~ 11166712 (+) False XLOC_009730
TCONS_00019484 lncRNA downstream 355694 11275659 ~ 11283602 (+) True XLOC_009731
TCONS_00021686 lncRNA downstream 441795 11361760 ~ 11376845 (+) True XLOC_009733
TCONS_00021896 lncRNA downstream 653224 11573189 ~ 11573798 (+) False XLOC_009736
TCONS_00021687 lncRNA downstream 660687 11580652 ~ 11583878 (+) True XLOC_009737
TCONS_00019472 mRNA upstream 55868 10841163 ~ 10863041 (+) False XLOC_009727
TCONS_00019468 mRNA upstream 98000 10776688 ~ 10820909 (+) False XLOC_009726
TCONS_00019470 mRNA upstream 99136 10777116 ~ 10819773 (+) False XLOC_009726
TCONS_00019469 mRNA upstream 119923 10776831 ~ 10798986 (+) False XLOC_009726
TCONS_00019467 mRNA upstream 184609 10724406 ~ 10734300 (+) True XLOC_009725
TCONS_00019477 mRNA downstream 43637 10963602 ~ 10988152 (+) False XLOC_009728
TCONS_00019478 mRNA downstream 52768 10972733 ~ 10985195 (+) True XLOC_009728
TCONS_00019479 mRNA downstream 109797 11029762 ~ 11142797 (+) True XLOC_009729
TCONS_00019480 mRNA downstream 231734 11151699 ~ 11222825 (+) False XLOC_009730
TCONS_00019481 mRNA downstream 268845 11188810 ~ 11224444 (+) True XLOC_009730
TCONS_00019473 other upstream 62500 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019457 other upstream 594244 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 625972 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 1360806 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019442 other upstream 1391700 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019483 other downstream 322595 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019500 other downstream 780681 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019511 other downstream 1321525 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 1380204 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019518 other downstream 1460765 12380730 ~ 12380846 (+) True XLOC_009756

Expression Profile

//