RNA id: TCONS_00019477


Basic Information

Item Value
RNA id TCONS_00019477
length 2309
RNA type mRNA
GC content 0.51
exon number 15
gene id XLOC_009728
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10918252 ~ 10991240 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACACTTCTTCAGCAACATGACAAAGACCGGGCCCGTTGCATCCATGGATTACTCCCATATGTGGTTTCCAGACATCAGAATGTCAAAACCAGTAGAAGTTGAGAATCCAGCGGCAGATTCTCCAATGGAGAGCACAGGTACAGTACAGAAAAGAAATGGCTCAGATTCAAATAATCAGGTTCAGCCAATGAAAATCAACCCTTTCTCCATTTCACCCACATTGAGCAGCAGCATCAAGGCGAAAGTGGAGGATTGTGGTGAAATGTCTCCCACCACTGCTACACCCGCTCAGACAGCTCTTAcccacacacagctgatgctgacAGGAGGACAGCTTGCAGGaGACATTCAGCAGTTACTGCAGCTGCAGCAGTTAGTCCTCGTTCCAGGACACACTCTGCCTTCACCCGCACAGTTTCTCTTACCACAAACACAGCAAGGCCAGCAAGGGCTGCTATCGACACCAAATCTAATTCCTCTACCTCAGCAAAACCAAGGAAGCCTGCTGGCCGCTCCACCCAGACTTAGTCTTCAAGCACAGAGAGAGAAAATAGCAGAGAGCAGCCTGAACACAGTGACCACAGTCACCTCCCACCCTGAGGAGCCCAGTGAcctggaggagctggagcagTTTGCCCGCACATTCAAGCAGAGGAGGATCAAACTGGGCTtcacacagGGTGATGTGGGGCTGGCCATGGGGAAGCTGTATGGGAATGATTTCAGTCAGACCACTATCTCTCGATTTGAGGCGCTTAATCTCAGCTTCAAGAACATGTGCAAACTCAAACCTCTGTTGGAGAAGTGGCTTACTGATGCAGAAACAATGTCGATGGACAGTACCCTGCCGAGTCCCAGTTCTCTCTCGTCTCCCTCGCTGGGGTTCGAGGGTCTGCCTGGCCGCCGCAGGAAGAAACGCACCAGCATTGAGACCAATGTCCGCGTCGCTCTGGAACACAGCTTTTTAGCGAACCAGAAGCCTACCTCAGAGGAGATCCTGCTCATTTCAGAGAAGCTCAACATGGAGAAGGAGGTGATCCGCGTGTGGTTCTGCAACCGCCGACAGAAAGAGAAACGTATTAATCCCTCCAGTGCCACCCCTCCCTTGCCCAGCCAACCCCAGCCCACCTCGCACAAACCCCCCTGCTACAGCCCGCACATGATGTCCAGTCAGGGTCCACGACAGACAGTGGGCAGCCTCAGTACAGCAGTGACTACCATGTCATCAGTTTGCCCAATGACACCAAGCGGGCCCTCCTTAAGCTCCACCCCATCTCCTGTAACCCCGCCTCCCCGTGGTGATTCCAGTCCCGCCCCTCCAACTCACAGTACACTAAATCTGAGCACAGGTTCATGGCATAAAAAGAATGGTGACGTTTCAAACTACATCACTGACTTTGCTGCAAGTTTGAGCTCTAGCAGCCAGTGGTGGCCAGCTCCCCATTTCCAGTCTTGAGGGCAGCAGCAAGGTGTTAATTGGTGGTTCTGGGGCCCAAGGAGCTGGTCTCCCTTCTTCTCTCTTCCTCAACCACTCCTCTATGTTGCCCTTGGCAACAGGCCCTGGAATGGGATTGGGCGGTTCAGCTGTTGGTAAAACCTCATTTCCTGTCACAGGCGGGATGAGCCCCTCTCCTTGTTCAAGCCCAGCTTCTTCCTACTCTTCCGGCGAAATGCTACACAGCCCGCACTCGATTGGAGGGGCTAAAATCGAGTGACGTTGTCCAAAGCCAATCacaggaggagaaggaggaggtgAAACCTTACCTGTCAACCAAAGCATCTCTTGAGCCCCTCGCTCCCTTCTAGTTCCTCTCGTTCACACTCCCTCTCTTCCGCTCTCCCACTCTACCGATGCCAAAAATATACAGAGTAGAAGaggggagagatggagagatggagtgGACGGAGGATGGAAGAGCAGACGAGGGAAAACGAAACCAAAAATACACCACAAGGCTTAGCAGGGCGCAGCCAAATATGTCAAAAaaagaagaacaacaacaaaaaaaaagactatgTGCATAGTGCAGGACGAAAAGAGATCCTTGAGCACCAAAAAGGACAGACTTTACTGTGTGTTGTAGAACTATGGCAACTCTTTGCAGCAAACAAGTGGAGTACCGAAATACCAAAAAGTATAAAGGAACTTTGAGATACTCACTATGACAAAAGAATACAAGCAAACCAAATCTCAAATACCAAAAACAAACACCAAAAATACGGATGGAAAAGCTTTATCCAAAGGACCTGTAAATAGCCAGCCGTCCAGGACCAGACCCAGTGACAAAACTTCAGCCATCTCTGAGC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060310-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Is expressed in forebrain; immature eye; and midbrain. Orthologous to human POU2F2 (POU class 2 homeobox 2).

Ensembl:

ensembl_id ENSDART00000141032

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021895 lncRNA upstream 43637 10918909 ~ 10919965 (+) False XLOC_009728
TCONS_00019475 lncRNA upstream 101460 10859429 ~ 10862142 (+) True XLOC_009727
TCONS_00019474 lncRNA upstream 103736 10858235 ~ 10859866 (+) False XLOC_009727
TCONS_00019471 lncRNA upstream 149974 10812796 ~ 10813628 (+) True XLOC_009726
TCONS_00021684 lncRNA upstream 345916 10617354 ~ 10617686 (+) True XLOC_009724
TCONS_00021685 lncRNA downstream 163624 11151776 ~ 11166712 (+) False XLOC_009730
TCONS_00019484 lncRNA downstream 287507 11275659 ~ 11283602 (+) True XLOC_009731
TCONS_00021686 lncRNA downstream 373608 11361760 ~ 11376845 (+) True XLOC_009733
TCONS_00021896 lncRNA downstream 585037 11573189 ~ 11573798 (+) False XLOC_009736
TCONS_00021687 lncRNA downstream 592500 11580652 ~ 11583878 (+) True XLOC_009737
TCONS_00019472 mRNA upstream 100561 10841163 ~ 10863041 (+) False XLOC_009727
TCONS_00019468 mRNA upstream 142693 10776688 ~ 10820909 (+) False XLOC_009726
TCONS_00019470 mRNA upstream 143829 10777116 ~ 10819773 (+) False XLOC_009726
TCONS_00019469 mRNA upstream 164616 10776831 ~ 10798986 (+) False XLOC_009726
TCONS_00019467 mRNA upstream 229302 10724406 ~ 10734300 (+) True XLOC_009725
TCONS_00019479 mRNA downstream 41610 11029762 ~ 11142797 (+) True XLOC_009729
TCONS_00019480 mRNA downstream 163547 11151699 ~ 11222825 (+) False XLOC_009730
TCONS_00019481 mRNA downstream 200658 11188810 ~ 11224444 (+) True XLOC_009730
TCONS_00019482 mRNA downstream 254291 11242443 ~ 11292148 (+) False XLOC_009731
TCONS_00019485 mRNA downstream 309551 11297703 ~ 11344727 (+) True XLOC_009732
TCONS_00019473 other upstream 107193 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019457 other upstream 638937 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 670665 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 1405499 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019442 other upstream 1436393 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019483 other downstream 254408 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019500 other downstream 712494 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019511 other downstream 1253338 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 1312017 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019518 other downstream 1392578 12380730 ~ 12380846 (+) True XLOC_009756

Expression Profile

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