RNA id: TCONS_00019481


Basic Information

Item Value
RNA id TCONS_00019481
length 7564
RNA type mRNA
GC content 0.48
exon number 18
gene id XLOC_009730
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11151699 ~ 11224444 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGGACTAATGTTGAGCCCAGATCGGTTCCAGTGTTTCCTTGGCATTCATTGGTCCCTTTCCTGGCACCCACCCAATCAGATCCATCGGCTCAACCTGGCGAAGGCCAACAAACTGTCAGCCATCCGCAGACGGCCGCTCTGAAGAAAGGTAATTCACTTTGCACCGCCATTGTCTGATTAGCCGAAATGTGTGTCAGattataaaacaatacatttacgaTTAGAATGTATTTAGAAGAATTTATTTTCTGGGATAGTCCACACACTGATATGTCTGTCACATCTGCAGTTACTCTCTGTAACTCGAGCCGCTGTAATTTAGCCATTACCCAGTGCAACGATTGACCTCAGAGGTTGCCAGATTGGTGGGATTCATTAAAGATGCCGTAATGAATGAGTCGCTTTTCCTCTTCCAGAGTCTCAGAGCGGGTCAGTGCTGAAAGAGATTATAGAGGGAGCACCTAACCCTTCCTCACGCCCCACTCCCTCCGCTGACGAACTCCCTCCAGAGAGAGAGAAGGATGCGGAGCGAGAGAGACCTGACAGCGAAACAGAAAGTGACGTGGATGATCCGTTTTTCCCCGGTGTTCTTCCTGATCCTCCAATTTCTGCATCTCCTGGAAAGCGTAGATCTCAGTCCCTCAGTGCTCTCCCCAAAGATGACAAGAACAGTCCTGGCAAGAGGGAAAAAGATCATATCAGGAGGCCTATGAATGCATTTATGATCTTCAGCAAGCGACATCGCGCACTGGTTCATCAGAGGCACCCGAATCAGGACAACCGCACTGTCAGCAAAATACTCGGAGAGTGGTGGTACGCCCTGGGACCcaaagaaaaacagaaataccACGACCTCGCATTTCAGGTAAAAGAGGCACACTTTAAGGCACATCCTGACTGGAAGTGGTGTAATAAGGACAGAAAGAAATCCAGCAGCGAGGGACGTGGTGTTCCAGGAGGCAAAGACATCCGCGAGAGGAGCATGTCAGAAACCACAGAACCTCCATCTGTGTCAATGGGGATGGAGCTCAAAGGTATGGGTCCTGGCATGGTGAGCGTGTCAGAGCGAGTTGGAGGTGAGGGGCATGGCCAGTTGACCCGTCCTCGTGCTTTCTCTCAGAGCGCCATGCACAGTCTGGAGAGGAGCGAGAGAGGCAATCCACAGGCACTCGCTGAGCTTGCACAGATGTGTGGTGACGGCAGTCAGGTTGGGGGACGGGGTGCTCTCTCCCAGACGCAGAGGGGGGTAAGCGAGGACATGACGAGTGACGACGAGCGCATGGTTATATGTGAAGAAGAGGGGGATGATGACGTCATCGAGGACTCGTATCCTGGCAGCTCCATTGACCTGAAGTGTAAGGAGAGGGTGACAGACAGTGACAGTGAAAATGGATCCGGAGATGAAGGAGAACGCAAGAGGGTGTTTGCTCCAGTTATTTGCTCTTCATCTTACGGTCCTGGTCATGGTCGGAGCGTGTCTCTCTCCTCCTATCCCACTTCTCGACGCTTCAGCGACACTTCTTCAAAGAGAAAGCGAACAATAGAGGCAGGTGATGGAGAACAAAGGGAAGGTGAAGGAGGTGCTTCCCAGCCCTCTGCGGGTCAGTCCATCCTGGTCAGTTCTGGCGGGGGAGTGTCATCAATGCTAGGAGCAGTCAGAGTGGCGTCCACTGTGGTCACTAACGTGGTGCGTCCTGTGGTCAGCACACCGGTGCCGATCGCCAGCAAGTCGCCACATGACAGGAAACTCGCCCCGTCACAAACGCAACTTCTTATCGGACATGGTGCCACAGGAAACACAGCAGCAGCTTCAGCTGGAGGTGGTGGGTACTATTCCTCATCATCGCCCAGTCCTATAAATGCACCAGCTGGTCAAGCGGGACTTGTGACCAATCTGGTTTTGGGAGGCACGTTTCAGGCTCCGCCCGCTGTACAACTTGTCACGCCTCCTCCTCCTTCACAAAACCCAGCTTCCCCAGCTCATAGTAATGGTCCTCTGCCTCTGCCCGTGCTACAGTCACATATTCTCCCCTCGGGCTCATTAGCTCCCTCATCAGGCCAAAAACCTATAACACAGGTCCAGTACATTCTCCCTACCCTCTCTGCCAACAATCCCAAGAGCCCCTCCCCTCAGCAGGCCAGTCAGCCAACCAGTATCTTCACCCTGCCCACAGCTCTGCCCACTCACGCCACACTGGCCAACGGAAAGCAGTCAGGATACGTCTCCAGTCCTGTGGGGGTAGTTAGTCCAGGAGCCAGAGTGCAAACACAGTCGCCAGTCTTGCAGGGCAAGATGCTGGTTCCCATGGCAACAGTGAGGGCTGCTCCTGCCCCGTCTCCGCAGTTTCCCCTGGTAGCCCCTCCTCTTCCTGTTCAGAATGGAGCACAGGCAGGAAGCAAGATTATTCAGATCGCTCCGATGCCAGTCGTGCAGTCTCAGCTCCCCTCTGCAGGCCCAGTGCAGCCTGGGAGCCCATTTTCAGTTACTATGGGAACAGCTACAGTAGTGGCCCCAGGCTCTACCCCGTCTCAGACCGTGCTGCTACCGCCTCCACCTACCAGAATCACTTATGTACAGTCCACTCCTGGGGTTCCTTCTCCTTTGCCATTAGTTCCCTCAACTACAGGCTCCTCGTCTCAGACAGTTTCAGCAGCACCTGGATCTGCATATGTTTCCTCACCCTTGGCCACGTTTGCAGCTATCGCTCATCCGGGACAGACACTGGTGCAGCCGCTGATTGCAGGTCAGCCATCACTGCTCGCCCCGGCCCAGTCTCCCAACCCCCCTCACGCTCCTGCTATCACAGCCCTCTACACCCCAACAAATGTGACCCTTGCAACTGGGGTGGTATCTATGGCCACAGTGTCTCCGAGTGTTGTTTACACAGTGTCCAGTTCTTCTAGCCTCTCTCCACACATCCTTCCCAAACACACCACAGCAACCTCCATGACCCCTGTCACCCTGGACCGGCAGGTGAACGTTTCTGTGCACTCTGAGCGACAGTTGCACCAGGAGAGATCCCTAGAGCGACAGCATACAGACAGTCAGGTCTACACGCTGTCCTCTGAGAGACAGACGGAGAAGGGCTGTCTCTTACAGTTGGACAAGCACTTCCAGGTCCCAAGCAAAGGCAGCAGCAGCTCTGTTGCGCCACCATCGGCCACCTCAGTGCCATTGCAACCTGGAAGCCCTGCACAACCCTCTCATTCTGGAAGTGCCCCGGGGACACCTAAGCTGATCACAGCAAGGCCTCCTCAGAAAGTGAAGGCCACCCTGGCAAATATCCCAGTGGGCAGTTATGATGGAGGAGGGAGAGGCAAAGAGCGGGAGAAGGAGAGGGACAGAGACAAGGAGAGAGAGCGGGAGAAGGACAAAGACACCAGTAGTCGCTTCTCATTTGAGGTAGAAAAGGTAGAGAAGATAGAGAAGTCAAACTCTCCTGCAGAGGAGGGAGCTCCAGAAACACCCACCCACTTTGGTGTGGAGACTTCTGCCCCTAGTGGACGTTGCAAAGAGACAAATGCTAAGGAGGTTGAAAAGAAGGACTCCCATCCTTCTTCTCCATTACCTCCTCCATCTGGATCAGATCCTTCCCCATCACAGTCTCATGGTGATAAAGATGCACCACCTAAAAAAGTCAAGGCCCGTCCCCCACCCCTCAAACGGCCATTTGATTCGGTTGACAAGGTCCTGTCCGAGGTGTATTTTGAGGAGCGTTTCGCAGAGCTGCCAGAATTCCGTCCAGAGGAGGTCCTGCCATCTCCAACCCTGCAGAGTCTGGCCACCTCCCCACGAGCCATACTGGGCAGCTATCGCAGAAAGAGGAAAAACTCCACTGACCTGGACTCATCCACTGAAGATCCCATCTCTCCTAAACGGAAAAGCCGGCGCAGATCGAGCTGCAGTTCAGAGCCCAACACACCGAAAAGTGCTGCAAAGTGCGAGGGAGACATTTTCACCTTTGATAGGCCAGATGGAGAGGATATACTAGGGGAGCTGGAGTTTGACAAGGTGCCCTATTCCTCTCTCAGGAGAACTCTTGATCAGAGGAGAGCTCTTGTCATGCAGCTATTCCAGGATCATGGCTTCTTCCCCTCAGCTCAAGCTACTGCTGCGTTCCAGGCACGGTATGCTGATATCTTCCCAACAAAGGTGTGTTTACAGCTCAAGATTCGAGAGGTCCGGCAAAAGATCATGCAAACGGCAGCTCCATCAGAATCTGCTGGTATTTCAGACCTTTCATTACCGGGACCTTCCGGAGTGGTGACAATGGACCCAGCTTTAGGGGCAGACCCTCTGGAGAAGGAGGTTGAGCGAGAGGGTGAACAACACAGCCCAGAGGAGCCTAGAAACGCTGGCGATTCACAGGACTCCTCAAGATGAGGCTAATGTCCAAACGGACAGCTCGAAGACCTGAAGTCTCCCCTCAACATCTGCACGATCTACATTTGTTGTCCTGTCTCTGCTATGACCGCTTCCGAAGGACATAGCGAGAAAAAGAGCCAAATTTTCATGTGTGTGAAGCGGATGAGGGGAGACACCTCAAAAGATGTTGGGGTTTTGAAACTTCTCAGTATTTTTCGTGATGTGGACTTACATACATAGACATTTGCCTACACAGACACTCTTGAACATACACTCTTGAATTTACAGCATTATCCTAGTCATTAGGCTTCCTTTGGAACTAGAGGACTGTGGGCCTGTCCTGTTGGCCAGTGAAGTCccagtgctgctgatgatgtgcgAGGGCACCCGATCCCTTCCACTCTGACTGAGTTTTCGTATGGCCTGATTGGCAATAGCTTGGCCAcaggtgtttgttttttattggttCACGGATTACCGCCGGTCATTGGGAGGCAGGCCTCCATTGGCTGAGTTTAAGTGATAATGAAGACTTGTCGgacttttatgttttatatttagtttgttttcttCTGTGGTGTTTTCACGATTTCTCACAAAGAGCTTTTGTTAAGGCACTGAAAACCTTCGGCGAGGGACTGCCGCTTGTAAACCTTTCGTCCTATGATTGGCTTTTATTGGTGGCCAATCAAACCGGAGTCATTCCAAAGCCTCCGATTGGCTAGCCATGAAGGAAAAAAGGTCATGGAAGTCAACAGGCACATTTATTGccattgattcttttttttttttccttcttccaTATATTAAGAGATTCCACCTATTTAAACATTTCTTCCCTTTCGTTTTGATTCAACTGTTCATGAGCTGGTGAAGCACGGAGCAAAGAGGATGTAGGGAATATATTCCGAAAAATACgaattttattcactttttaaaggaaaaacttgATTTTTCAACACGTAATGCTACAGGTCATTATGTTATGAAGATCTCTCATTATTACTGTTCTTATTAATGCTTTGTTGTTCTTGTGGATCTGATCCTTTAaacctatatataaatatatataaatatactgtacTCCTATTAATATACTCTTTCGTTTAGCAGAAAAGGAGGGATGAGTTTGCACTCTTCCTCACTCCTGGAGGCACTTCCActacctttttaaaaacatttttctctTACGCTCTTTGTCTTGATATTCACGATGTTTTATTTCTTACCAGGAAGTAATTACGTAGGCCTTTGTTGTAAGACACTCCAAACATTTTTCTGGTAGTtgtacactttattattattattattatcgtttccATTTGCCACTTACATTCCTTCCCTTTCTCATTCCTCTTCCCGTCACTTTATTGTTCTTTCTTTAATCACTTTAAGGCTGTAAGGTGGGACTGGGTGGGCTGTCGATGGTGATCTACTCCTGCAGCACTGGTCTTTGTTGTACATAAATACAGTGCGAGTCCAAAGACTCGAAGTCAAAAGCGTCATCGGAGGAATCAAAGCCAGTAAAaggaaataaaattgtaaaacaaaaacgaaaaataaagaaatatggtTATAAACAGTTCTTACGTTGTTTTGCTGGTTTACATATTTGAGGACTGACAGTTTAGCTGTGTTTCTCAGTGTATGAATAATGTTCAAAGAAATCGCCTCTTCTCTATTACAAGTAAAACAAATGAGGAAGTGCGAGTTGGGTAATGTCTGGGTTATTTTTTTCTGAGTAAAATTATGTGTAAAACGATCACTGATCTATTTTCGGGTGCTTCTGGGATGACACTCTTTGGACTGGGGAAGTAGTTCGAAACGTTACGGTAGGCTCTCTTAGTACATAAACCATTCTGTTTCATGTGACCTTTAATAATTATGTGTCAGGatgtttacacatttttttctctttacagTCACATTTCGTTTTGCTGTCTGAACTGAAATCATCCTACAAAGGCACTGCATGAAGAGtctaatgcaggggtcaccaatcctggtcctggagggccggtgtccctgcagggtttagctccaacttgccttaacacacctgcctggatgtttcaagtacacctagtgagagcttgattagcttgttcaggtgtgtttgattagggttggtgctaaaatctgcaggacaccggccctccaggaccaagactggtgacccctggtctaatggATCCATGTAACATCAAAATGGGTTTCAAGATTTAATCAAGGTCACCAACAAAAAAGTAATTTCTACCTTGGAGCATTACCAATAGACTGCTTTTCTGTCTTGGTTTGGTTTTTGTCTTTAAAAGTCAGCGGGGTTAAATGTTGAGTTTCATTGTGTTTTACAAAAGTAATTTCTATAtgcacacaccggccactttattaggtacacctgtccaactgtttgttaacgcaaatttccaatcagccgatcaaatggcagcaactcaatgcatttaggcatgtagacatgctaaagctgatctgctgcagttcaaactgagcatcggaatggggaagaaaggtgatttgaatgtggcatggtgttttgtgtcagacgggctggtctgagtatttcagaaactgctgatctactgggattttcaaacacacaaccatctctggggtctacagagaatggtttgaaaaagaggaaatatccagtgagcggcagttctgtgggcgcaaatgccttgttgatgcctgaggtcagaggagaatggccagactggtttaagctaatataaaggcaacagtaactcaaataataacTCATTACAACccaggtatgcagaagagcatctctaaatgcacaacacatccaaccttgaggcggatgagctacagcagcagaagaccacaccgggtgccactcctgtcagggaaaaacaggaaactgaggctacaattcacacagactcaacaaaattggacaatagaagattggaaaaatgttgcctggtctgttgAGTCCCCACCATAAATtcggatggtggggtcagaatttggcaacaacaacatgaaagcatgaatccatcctgccttgtatcagtggtttaGACTGGTGGTGGGGTAATGGTGtggggagatattttcttggcacactttgtgttcattagtaccaattgtgcATCGTGTCagtgccacagtctacctgaatattgttgctgaccatgtccattcctttatg

Function

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1966 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within primitive erythrocyte differentiation. Predicted to be active in nucleus. Is expressed in head and hindbrain neural rod. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 45. Orthologous to human CIC (capicua transcriptional repressor).

Ensembl:

ensembl_id ENSDART00000186011

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021685 lncRNA upstream 22098 11151776 ~ 11166712 (+) False XLOC_009730
TCONS_00021895 lncRNA upstream 268845 10918909 ~ 10919965 (+) False XLOC_009728
TCONS_00019475 lncRNA upstream 326668 10859429 ~ 10862142 (+) True XLOC_009727
TCONS_00019474 lncRNA upstream 328944 10858235 ~ 10859866 (+) False XLOC_009727
TCONS_00019471 lncRNA upstream 375182 10812796 ~ 10813628 (+) True XLOC_009726
TCONS_00019484 lncRNA downstream 51215 11275659 ~ 11283602 (+) True XLOC_009731
TCONS_00021686 lncRNA downstream 137316 11361760 ~ 11376845 (+) True XLOC_009733
TCONS_00021896 lncRNA downstream 348745 11573189 ~ 11573798 (+) False XLOC_009736
TCONS_00021687 lncRNA downstream 356208 11580652 ~ 11583878 (+) True XLOC_009737
TCONS_00019501 lncRNA downstream 484066 11708510 ~ 11709498 (+) True XLOC_009744
TCONS_00019479 mRNA upstream 46013 11029762 ~ 11142797 (+) True XLOC_009729
TCONS_00019476 mRNA upstream 197570 10918252 ~ 10991240 (+) False XLOC_009728
TCONS_00019477 mRNA upstream 200658 10963602 ~ 10988152 (+) False XLOC_009728
TCONS_00019478 mRNA upstream 203615 10972733 ~ 10985195 (+) True XLOC_009728
TCONS_00019472 mRNA upstream 325769 10841163 ~ 10863041 (+) False XLOC_009727
TCONS_00019482 mRNA downstream 17999 11242443 ~ 11292148 (+) False XLOC_009731
TCONS_00019485 mRNA downstream 73259 11297703 ~ 11344727 (+) True XLOC_009732
TCONS_00019487 mRNA downstream 259367 11483811 ~ 11555934 (+) False XLOC_009734
TCONS_00019486 mRNA downstream 259367 11483811 ~ 11555934 (+) True XLOC_009734
TCONS_00019488 mRNA downstream 334424 11558868 ~ 11569729 (+) False XLOC_009735
TCONS_00019473 other upstream 332401 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019457 other upstream 864145 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 895873 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 1630707 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019442 other upstream 1661601 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019483 other downstream 18116 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019500 other downstream 476202 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019511 other downstream 1017046 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 1075725 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019518 other downstream 1156286 12380730 ~ 12380846 (+) True XLOC_009756

Expression Profile

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