RNA id: TU466781


Basic Information

Item Value
RNA id TU466781
length 277
lncRNA type read_through
GC content 0.41
exon number 2
gene id G406210
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5830084 ~ 5831741 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCAACAGTAACACTGAATTTCTTGTGTAAGATCATTCTGATGCTGTTGAACTCCATTTTATAATATCCAGACTGATCGATTCTGATGTTTCTGATGGTGATTTCTCGGGTTTGAGCATTTAGATCAATGTTCCTCCATCTTTCATCAACAGCGGTGTTTAAGCCATCAGTGAGGATGACCTGATCTCCAAACTTCCACAGTATCTGATCATCTCTCTGTATATCAGTAACACCAGTGTGTAGACTGACAGAATCTCCCTGCATCACTGGCACTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466760 lncRNA upstream 2115 5756777 ~ 5827969 (+) True G406189
TU466735 lncRNA upstream 67768 5759224 ~ 5762316 (+) True G406164
TU466774 lncRNA upstream 84658 5312168 ~ 5745426 (+) True G406203
TU466941 lncRNA upstream 190218 5634748 ~ 5639866 (+) True G406354
TU466892 lncRNA upstream 275216 5552642 ~ 5554868 (+) True G406315
TU467011 lncRNA downstream 67916 5899657 ~ 5899988 (+) True G406417
TU466739 lncRNA downstream 96441 5928182 ~ 5929929 (+) True G406168
TU467021 lncRNA downstream 116957 5948698 ~ 5948928 (+) True G406427
TU466784 lncRNA downstream 181667 6013408 ~ 6015647 (+) True G406213
TU466791 lncRNA downstream 193310 6025051 ~ 6025357 (+) True G406220
CI01000299_05816534_05817445.mRNA mRNA upstream 12628 5816534 ~ 5817456 (+) True CI01000299_05816534_05817445
CI01000299_05799020_05801977.mRNA mRNA upstream 27970 5798942 ~ 5802114 (+) True CI01000299_05799020_05801977
CI01000299_05778912_05790662.mRNA mRNA upstream 39329 5778563 ~ 5790755 (+) True CI01000299_05778912_05790662
CI01000299_05732790_05737401.mRNA mRNA upstream 92282 5732790 ~ 5737802 (+) True CI01000299_05732790_05737401
CI01000299_05619817_05725510.mRNA mRNA upstream 102645 5619704 ~ 5727439 (+) True CI01000299_05619817_05725510
CI01000299_05836707_05843149.mRNA mRNA downstream 4560 5836301 ~ 5843594 (+) True CI01000299_05836707_05843149
CI01000299_05844429_05845510.mRNA mRNA downstream 12420 5844161 ~ 5845665 (+) True CI01000299_05844429_05845510
CI01000299_05864998_05873333.mRNA mRNA downstream 31893 5863634 ~ 5873515 (+) True CI01000299_05864998_05873333
CI01000299_05903841_05913302.mRNA mRNA downstream 69723 5901464 ~ 5915312 (+) True CI01000299_05903841_05913302
CI01000299_05925030_05926229.mRNA mRNA downstream 92929 5924670 ~ 5926297 (+) True CI01000299_05925030_05926229
TU466818 other upstream 456505 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 902240 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1125459 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1324167 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1509943 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 406097 6237838 ~ 6300508 (+) True G406161

Expression Profile