Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU466739 |
| length | 1728 |
| lncRNA type | antisense_over |
| GC content | 0.47 |
| exon number | 2 |
| gene id | G406168 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 5928182 ~ 5929929 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU467011 | lncRNA | upstream | 28194 | 5899657 ~ 5899988 (+) | True | G406417 |
| TU466781 | lncRNA | upstream | 96441 | 5830084 ~ 5831741 (+) | True | G406210 |
| TU466760 | lncRNA | upstream | 100213 | 5756777 ~ 5827969 (+) | True | G406189 |
| TU466735 | lncRNA | upstream | 165866 | 5759224 ~ 5762316 (+) | True | G406164 |
| TU466941 | lncRNA | upstream | 288316 | 5634748 ~ 5639866 (+) | True | G406354 |
| TU467021 | lncRNA | downstream | 18769 | 5948698 ~ 5948928 (+) | True | G406427 |
| TU466784 | lncRNA | downstream | 83479 | 6013408 ~ 6015647 (+) | True | G406213 |
| TU466791 | lncRNA | downstream | 95122 | 6025051 ~ 6025357 (+) | True | G406220 |
| TU467052 | lncRNA | downstream | 203914 | 6133843 ~ 6134043 (+) | True | G406458 |
| TU467057 | lncRNA | downstream | 205960 | 6135889 ~ 6136121 (+) | True | G406463 |
| CI01000299_05925030_05926229.mRNA | mRNA | upstream | 1885 | 5924670 ~ 5926297 (+) | True | CI01000299_05925030_05926229 |
| CI01000299_05903841_05913302.mRNA | mRNA | upstream | 12870 | 5901464 ~ 5915312 (+) | True | CI01000299_05903841_05913302 |
| CI01000299_05864998_05873333.mRNA | mRNA | upstream | 54667 | 5863634 ~ 5873515 (+) | True | CI01000299_05864998_05873333 |
| CI01000299_05844429_05845510.mRNA | mRNA | upstream | 82517 | 5844161 ~ 5845665 (+) | True | CI01000299_05844429_05845510 |
| CI01000299_05836707_05843149.mRNA | mRNA | upstream | 84588 | 5836301 ~ 5843594 (+) | True | CI01000299_05836707_05843149 |
| CI01000299_05935373_05943285.mRNA | mRNA | downstream | 4974 | 5934903 ~ 5943413 (+) | True | CI01000299_05935373_05943285 |
| CI01000299_05955084_05970603.mRNA | mRNA | downstream | 24287 | 5954216 ~ 5971417 (+) | True | CI01000299_05955084_05970603 |
| CI01000299_05988564_06002758.mRNA | mRNA | downstream | 58166 | 5988095 ~ 6003021 (+) | True | CI01000299_05988564_06002758 |
| CI01000299_06018839_06023448.mRNA | mRNA | downstream | 88910 | 6018839 ~ 6023510 (+) | True | CI01000299_06018839_06023448 |
| CI01000299_06029307_06034445.mRNA | mRNA | downstream | 99028 | 6028957 ~ 6034956 (+) | True | CI01000299_06029307_06034445 |
| TU466818 | other | upstream | 554603 | 5371181 ~ 5373579 (+) | True | G406244 |
| TU466651 | other | upstream | 1000338 | 4924462 ~ 4927844 (+) | True | G406096 |
| TU466374 | other | upstream | 1223557 | 4702382 ~ 4702508 (+) | True | G405864 |
| TU466383 | other | upstream | 1422265 | 4505404 ~ 4505917 (+) | True | G405866 |
| TU466350 | other | upstream | 1608041 | 4295533 ~ 4320141 (+) | True | G405842 |
| TU466732 | other | downstream | 307909 | 6237838 ~ 6300508 (+) | True | G406161 |
