RNA id: TCONS_00019484


Basic Information

Item Value
RNA id TCONS_00019484
length 901
lncRNA type retained_intron
GC content 0.47
exon number 4
gene id XLOC_009731
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11242443 ~ 11292148 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAATGTGTCATACATCTGTTCCCGGTATTACCGTGCTCCTGAGCTAATATTCGGAGCCACGGATTACACATCCAACATTGATATCTGGTCAGCCGGCTGTGTATTAGCGGAGCTGCTTCTGGGACAGCCCATATTCCCCGGTGACAGTGGAGTGGACCAGTTAGTGGAGATCATCAAGGTTTTGGGGACCCCCACAAGAGAACAGATCCGAGAGATGAACCCCAACTACACAGAGTTTAAATTCCCACAGATCAAAGCACACCCTTGGACAAAGGTGTTTAAGCCGAGGACTCCTCCAGAAGCCATCTCGTTGTGTTCTCGTCTGCTGGAGTACACGCCGGTGACGCGGCTCTCTCCGCTGGAGGCCTGCGCACACGCCTTCTTTGATGAGCTGCGCCAGCCCAATGCCCGTCTGCCTAATGGCCGAGAACTTCCCCAGCTCTTCAACTTCAGCCCTGTGGAGCTGTCTATCCAACCACAGTTGAACTCCATTCTCATTCCTCCACATGCTCGCTCGCAGACGACACCTGCCTCGCACGGTACTGATCACACTTACAAACACAGTGCCTTTGATTTACCCTTCATGTCAGTCTGTGTGGATTTGTGAATGCACGTGCCCTGAAGTATACTtcggtttttatttttatgctacaGTATACTGTACGATGCTGCAGATAGACAATGATAAAGTGTGTCAGTGTTGGTCAGAGATATTGGCAGTAGCTGATTTCTTTGACGATTTCaaggttttttaaaaaaacagataGAAAACACCCTTGCCATTTTTGCTTGAACAGATTGGAATTAGACTTCATTGGAAACTGTAAAGAGTTTACGTTCATTTGTGTGCCTGCAATAAACCCATCATGCATttgtaaataaagaaaacatacaGGATAA

Function

GO:

id name namespace
GO:0055013 cardiac muscle cell development biological_process
GO:0010975 regulation of neuron projection development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0008286 insulin receptor signaling pathway biological_process
GO:0016310 phosphorylation biological_process
GO:0001947 heart looping biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:0007165 signal transduction biological_process
GO:0030424 axon cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990714-3 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within cardiac muscle cell development; dorsal/ventral pattern formation; and heart looping. Predicted to be active in axon; cytosol; and nucleus. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human GSK3A (glycogen synthase kinase 3 alpha).

Ensembl:

ensembl_id ENSDART00000131997

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021685 lncRNA upstream 108947 11151776 ~ 11166712 (+) False XLOC_009730
TCONS_00021895 lncRNA upstream 355694 10918909 ~ 10919965 (+) False XLOC_009728
TCONS_00019475 lncRNA upstream 413517 10859429 ~ 10862142 (+) True XLOC_009727
TCONS_00019474 lncRNA upstream 415793 10858235 ~ 10859866 (+) False XLOC_009727
TCONS_00019471 lncRNA upstream 462031 10812796 ~ 10813628 (+) True XLOC_009726
TCONS_00021686 lncRNA downstream 78158 11361760 ~ 11376845 (+) True XLOC_009733
TCONS_00021896 lncRNA downstream 289587 11573189 ~ 11573798 (+) False XLOC_009736
TCONS_00021687 lncRNA downstream 297050 11580652 ~ 11583878 (+) True XLOC_009737
TCONS_00019501 lncRNA downstream 424908 11708510 ~ 11709498 (+) True XLOC_009744
TCONS_00021897 lncRNA downstream 834029 12117631 ~ 12118526 (+) False XLOC_009751
TCONS_00019481 mRNA upstream 51215 11188810 ~ 11224444 (+) True XLOC_009730
TCONS_00019480 mRNA upstream 52834 11151699 ~ 11222825 (+) False XLOC_009730
TCONS_00019479 mRNA upstream 132862 11029762 ~ 11142797 (+) True XLOC_009729
TCONS_00019476 mRNA upstream 284419 10918252 ~ 10991240 (+) False XLOC_009728
TCONS_00019477 mRNA upstream 287507 10963602 ~ 10988152 (+) False XLOC_009728
TCONS_00019485 mRNA downstream 14101 11297703 ~ 11344727 (+) True XLOC_009732
TCONS_00019487 mRNA downstream 200209 11483811 ~ 11555934 (+) False XLOC_009734
TCONS_00019486 mRNA downstream 200209 11483811 ~ 11555934 (+) True XLOC_009734
TCONS_00019488 mRNA downstream 275266 11558868 ~ 11569729 (+) False XLOC_009735
TCONS_00019489 mRNA downstream 275303 11558905 ~ 11567444 (+) True XLOC_009735
TCONS_00019473 other upstream 419250 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019457 other upstream 950994 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 982722 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 1717556 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019442 other upstream 1748450 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019500 other downstream 417044 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019511 other downstream 957888 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 1016567 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019518 other downstream 1097128 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019534 other downstream 2140946 13424548 ~ 13441633 (+) False XLOC_009767

Expression Profile

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