RNA id: TU467057


Basic Information

Item Value
RNA id TU467057
length 233
lncRNA type intronic
GC content 0.30
exon number 1
gene id G406463
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6135889 ~ 6136121 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACACCTTCACCCCTTATTCAAAGATTGTTAAAGGTTTTGTAATCATATTGTGTAGTTGTGCTTGGAGTCGATTTTTTATAACAACAAAATGTTTGGCCAGAGAAATTATGAAAATGCGAAAACAAGAGAGAACCAACAAAATATTAATAACTGATTATGTTGCATCCAGTGTTTGCTTTTTGCTCTCAGCTTTTTGTTTTTCTATGCATTTGGGTTTTTTTTTTTTTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467052 lncRNA upstream 1846 6133843 ~ 6134043 (+) True G406458
TU466791 lncRNA upstream 110532 6025051 ~ 6025357 (+) True G406220
TU466784 lncRNA upstream 120242 6013408 ~ 6015647 (+) True G406213
TU467021 lncRNA upstream 186961 5948698 ~ 5948928 (+) True G406427
TU466739 lncRNA upstream 205960 5928182 ~ 5929929 (+) True G406168
TU467055 lncRNA downstream 13478 6149599 ~ 6151122 (+) True G406461
TU467064 lncRNA downstream 47073 6183194 ~ 6183531 (+) True G406470
TU466733 lncRNA downstream 53658 6189779 ~ 6197674 (+) True G406162
TU467072 lncRNA downstream 70713 6206834 ~ 6207044 (+) True G406478
TU466767 lncRNA downstream 129633 6265754 ~ 6266230 (+) True G406196
CI01000299_06116505_06128180.mRNA mRNA upstream 7439 6115638 ~ 6128450 (+) True CI01000299_06116505_06128180
CI01000299_06100005_06114087.mRNA mRNA upstream 21426 6099717 ~ 6114463 (+) True CI01000299_06100005_06114087
CI01000299_06074050_06097303.mRNA mRNA upstream 38356 6074050 ~ 6097533 (+) True CI01000299_06074050_06097303
CI01000299_06029307_06034445.mRNA mRNA upstream 100933 6028957 ~ 6034956 (+) True CI01000299_06029307_06034445
CI01000299_06018839_06023448.mRNA mRNA upstream 112379 6018839 ~ 6023510 (+) True CI01000299_06018839_06023448
CI01000299_06177821_06180061.mRNA mRNA downstream 41700 6177821 ~ 6180191 (+) True CI01000299_06177821_06180061
CI01000299_06217616_06220842.mRNA mRNA downstream 81495 6217616 ~ 6221071 (+) True CI01000299_06217616_06220842
CI01000299_06223295_06227054.mRNA mRNA downstream 86771 6222892 ~ 6227186 (+) True CI01000299_06223295_06227054
CI01000299_06233485_06239858.mRNA mRNA downstream 96451 6232572 ~ 6239902 (+) True CI01000299_06233485_06239858
CI01000299_06269853_06274289.mRNA mRNA downstream 133481 6269602 ~ 6274393 (+) True CI01000299_06269853_06274289
TU466818 other upstream 762310 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1208045 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1431264 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1629972 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1815748 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 101717 6237838 ~ 6300508 (+) True G406161

Expression Profile