RNA id: TCONS_00021686


Basic Information

Item Value
RNA id TCONS_00021686
length 456
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id XLOC_009733
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11361760 ~ 11376845 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agagagagagagcagatgaGAAAGGGAGGGGGTTTGGAGTCAGAGTGAATGCAGCTTGCACTGCTGTGCTTTGGAATTACAGCTATGAACATTGTCAGGGACTTGAAAAAGAAAGGAAAGCAAAGGAGAAAAGGACAGAGGAAGCAAGAGAAAGATTGCAGAGCTTCTTGATGCGCGACGCAGAAGAAGACTGAAGGTAAAGAGGAGGCGCACCGGAGGAGCTTCACACCAATCCTCTCATCTTCAGTTCCTCAGCAGATCGGCCTGTTGTCCCTCATCACTGGGGTCGTCATTGGAACTGCGTCTCACCGTCTTAAAGCAAGACCGAGATACTCTGATGAGGAAATTCTCAGCGCGGCGACAGATGTGACGCCCCTCCTTTTCCCAATATCAGCTTCCACGGCCCCTGGAGCAGCCATAACCCGACCCGCCTCCATCCTAGACGTGCCGTTGTAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097447 dendritic tree cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0098794 postsynapse cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019484 lncRNA upstream 78158 11275659 ~ 11283602 (+) True XLOC_009731
TCONS_00021685 lncRNA upstream 195048 11151776 ~ 11166712 (+) False XLOC_009730
TCONS_00021895 lncRNA upstream 441795 10918909 ~ 10919965 (+) False XLOC_009728
TCONS_00019475 lncRNA upstream 499618 10859429 ~ 10862142 (+) True XLOC_009727
TCONS_00019474 lncRNA upstream 501894 10858235 ~ 10859866 (+) False XLOC_009727
TCONS_00021896 lncRNA downstream 196344 11573189 ~ 11573798 (+) False XLOC_009736
TCONS_00021687 lncRNA downstream 203807 11580652 ~ 11583878 (+) True XLOC_009737
TCONS_00019501 lncRNA downstream 331665 11708510 ~ 11709498 (+) True XLOC_009744
TCONS_00021897 lncRNA downstream 740786 12117631 ~ 12118526 (+) False XLOC_009751
TCONS_00021898 lncRNA downstream 740786 12117631 ~ 12139336 (+) True XLOC_009751
TCONS_00019485 mRNA upstream 17033 11297703 ~ 11344727 (+) True XLOC_009732
TCONS_00019482 mRNA upstream 69612 11242443 ~ 11292148 (+) False XLOC_009731
TCONS_00019481 mRNA upstream 137316 11188810 ~ 11224444 (+) True XLOC_009730
TCONS_00019480 mRNA upstream 138935 11151699 ~ 11222825 (+) False XLOC_009730
TCONS_00019479 mRNA upstream 218963 11029762 ~ 11142797 (+) True XLOC_009729
TCONS_00019487 mRNA downstream 106966 11483811 ~ 11555934 (+) False XLOC_009734
TCONS_00019486 mRNA downstream 106966 11483811 ~ 11555934 (+) True XLOC_009734
TCONS_00019488 mRNA downstream 182023 11558868 ~ 11569729 (+) False XLOC_009735
TCONS_00019489 mRNA downstream 182060 11558905 ~ 11567444 (+) True XLOC_009735
TCONS_00019490 mRNA downstream 196626 11573471 ~ 11578407 (+) True XLOC_009736
TCONS_00019483 other upstream 70877 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019473 other upstream 505351 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019457 other upstream 1037095 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 1068823 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 1803657 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019500 other downstream 323801 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019511 other downstream 864645 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 923324 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019518 other downstream 1003885 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019534 other downstream 2047703 13424548 ~ 13441633 (+) False XLOC_009767

Expression Profile

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