RNA id: TU466709


Basic Information

Item Value
RNA id TU466709
length 2929
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G406142
representative False

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6279419 ~ 6286426 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAACGTTCTGGCAAGGTTTTCTCAAAGTCATGAACAAACTTTTGTNNNNNNNNATCTGGTCTTTAATAATGTTCTCAAAACGTTAACACAAAAACATTATTTATTGTTCATGGAACACTTTCTAAATGTTACTAGTTGTTTCAGAACATTCATGGAACATTCAAAAGTAACGTTCCCAGAATGTTTCCAGAATTGTAAAATGGAATGTTCCCTTAACATTTGCATAGCCAAAAAACTGGACGTTCAGGGATCATTCAGAAATAACGTTCTTATAACTTTATGGGTTCTTAGAATATATTTTTGATTGCTGGGGTAACATCACTGATAAATCATCAACATGAATTAAGAGCGTGTCGTTGTTGAGTCACGTTGACTTCCTGTCAGACTCTTCGTACAGGCGTCTTCTGAAGCACCTCTCGCTTTGCTTTGGCTTTTATAGAATTTCTCATCTCTGGCATGACTTTGGCCATGGCGTTCTGGATCCACCGGATGTACTTGGAGACCTGCGTGTAGACGCCGTACTTGCCCTTCCGGGCGCATCCCTCGCCCCAGCTCACCACGCCCGTGACAAACCACGTGTTTTTGTAGCGCGTCACATGCGGCCCGCCGCTGTCGCCCTGACACGCATCTTTTTCCTCCTGGTCATATCCGGCACAGAACATGTGATTGGAGATTTGGAAATTGCTGGACTCTATGCACTTGCCACGGTCGATGTACGGCACCGTTAGCTTCTGGAGGATGGTGGACTGAAGGCCGCCTTCGCGCACACGGCCGAAGCCGCTCACCATACCTTCCTCCTGACGCATCAGCACACGCTCGGCGAAGTCGTTCTCCGGCAGGCAGGCGGGGAGGATGAATCTGGTGAATGTGATGGGCTTGCTGAGCTTAATGAGGGCGATATCGTTGTTGTAGGTGTCCGCCATATACTTCTTGTGAATCAGAATCTCATCTACGTCGTGGGTGACCTCACGACCCTCGTTGACCAGCGTGTCAAACTCACCTAACAGAAGGACGCAAACACTAATGAAAACACCCAAGAACTGATCAAATGTAAATGTGTATCTTGATTGCAATGGATGGAATTTAGGTAAAAGCGTCTGCTAAATGCGTAAATGTAAACAGATGTACTTCAGAATGAGATCTCTTTCATTTACCATTTTTTTTCTCCAAGATGGCCATGAGGGTAAGTGGAGACTTTTACTTAAGTCTCCCTCTCAGATGTTTCTCCTGAGAAAAACCCCCCATAAATCTCACATGTGTCTCCTCTAGAGTTTCAGAAGAGATCTCAATGTGAACGCAAACATCAGATGATCCAAGCACTCTCATTTACAACTTACTGGATGATGACTGTCGACTCATTTGAGTCTGTTTTTATTTCTTCTACACTCTTGAAAATAAAAGTTCCAAAAAGGGTTTTTTGCAGTGATGCAATAAAAGAACCATTTTTGGCTCCTCAATGAACGGCTCTTGAAGGATTAGTTCACTCCTGTAATTTACTCTTCTCCATGTCATTCAAGATGTTCATGTCTTTCTTTCTTCAGTGGAAAAGAAATGAAGGTTTTTGAGGAAAACATTCCAGGATTTTTCTCCATATAGTGGACTTCACTGGGGTTCAACGGGTTGAAGGTCCAAATGTCAGTTTCAGTGCAGCTTCAAAGAGCTCTACACGATCCCAGACGAGGAATAAGAGTCTTATCTAGAGAAACCATCGGACATTTCCTAAAAAAATTACATTTTTTTTTTTTTTTTACATAATCACGTTAGAAAGTCATCTGTCTAAGTTCTTTGTCTGTGTATTCTGGTTCAAAAAGGTAGGGTAGGACAAAAAACTCATTTTCTCATTATCTCATTTTCTTAAAATCATCTGACAACTTCAAAATCGTCTGACATCATTGTTTTACACTTTTTTTTTTTTGCACGTTCACTTTGTAAATTTCTTTTTCACTGAAGAAAGAAAGACATGAACATCTTGCATGACATGGGGGAAATTATCAGGAAATTTTAATTCTGAAGTGAACTAATCCTTTAAAAGAACCATTTTGCCCAAAAGGTTCTTTAGATTATTAAAATGTTCTAGAAAAATGGTTCCCTTAAGAACTGATCACTGAAAGGTTCCTTGAGGAACCAAAAAATGGTTCTTCTTTTGCATCTCTGCGAAAACCCCTTTTGGAAACTTTATTTTGAAGAGTGAAAAATGATTCCTTGGATGTTAAAAGTTCTAAATGGGATCATCGATATCAATTTATTTTTAAGAGTAATAAAAAGGAGAAACAACACCAAAAAACAATATTGTATTTGAAGAACATCATTAAGCTATTTTGTGCATCAAATGTCTGAAAATATGTGCATGAGAATATTTCAGTTTTGACACAAATGTTGAAGTGTAAAAGAGTTAAAATGTTCCTATAAAAGGCCGTACCTAAGACCACCCTGGTGTAGAGCGACTGATTCATACAGTGAGCGGCCGACAGGATGAAGTACTGGTTCAGGATGGTGCCGCCACAGAAGCCGATGTTGTCTTCATTAATGAGAAGAGCCTGAGAGAACATACAACGTCAACAATAACAGAGTAAAATCGGCATGTTTCATGTCTCCAAAAACTCAAGTATCATGCAAAAGAACAGTCCATGTTTGCATGTCTCTACCTGCCATGGACAATCTCCAGGAGGACATTCCACACCATTGACGATTCTTGTGATTCCTCCAGATGTTTCAGGTAAAATCGGTTCCTCTTGCTCTTTTTTAGCGATGTCCTGCTCGTGGAGGCCGAACATGCTGCTCGTCTCATTGGCCGATGAGTTTGTGGCGTCTATGAAAGACTCGACGGTGGTCTCAATGTGAGTCTCCTCTTCAGTCTCACTGTTGGTGATGTTTGGCATGTGTATGAAGATTCTTCTGGTCTTCGGAGGATGAATGACGCCACATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466767 lncRNA upstream 13189 6265754 ~ 6266230 (+) True G406196
TU467072 lncRNA upstream 72375 6206834 ~ 6207044 (+) True G406478
TU466733 lncRNA upstream 81745 6189779 ~ 6197674 (+) True G406162
TU467064 lncRNA upstream 95888 6183194 ~ 6183531 (+) True G406470
TU467055 lncRNA upstream 128297 6149599 ~ 6151122 (+) True G406461
TU466743 lncRNA downstream 23982 6310408 ~ 6311699 (+) True G406172
TU467074 lncRNA downstream 36759 6323185 ~ 6323623 (+) True G406480
TU467088 lncRNA downstream 105654 6392080 ~ 6392356 (+) False G406494
TU467090 lncRNA downstream 105722 6392148 ~ 6392356 (+) True G406494
TU467131 lncRNA downstream 254836 6546125 ~ 6546203 (+) True G406532
CI01000299_06269853_06274289.mRNA mRNA upstream 5026 6269602 ~ 6274393 (+) True CI01000299_06269853_06274289
CI01000299_06233485_06239858.mRNA mRNA upstream 39517 6232572 ~ 6239902 (+) True CI01000299_06233485_06239858
CI01000299_06223295_06227054.mRNA mRNA upstream 52233 6222892 ~ 6227186 (+) True CI01000299_06223295_06227054
CI01000299_06217616_06220842.mRNA mRNA upstream 58348 6217616 ~ 6221071 (+) True CI01000299_06217616_06220842
CI01000299_06177821_06180061.mRNA mRNA upstream 99228 6177821 ~ 6180191 (+) True CI01000299_06177821_06180061
CI01000299_06312445_06318421.mRNA mRNA downstream 25614 6312040 ~ 6318421 (+) True CI01000299_06312445_06318421
CI01000299_06322253_06326504.mRNA mRNA downstream 35827 6322253 ~ 6326562 (+) True CI01000299_06322253_06326504
CI01000299_06396938_06400105.mRNA mRNA downstream 110512 6396938 ~ 6401342 (+) True CI01000299_06396938_06400105
CI01000299_06416707_06422267.mRNA mRNA downstream 130281 6416707 ~ 6422648 (+) True CI01000299_06416707_06422267
CI01000299_06424909_06425694.mRNA mRNA downstream 138385 6424811 ~ 6425733 (+) True CI01000299_06424909_06425694
TU466818 other upstream 905840 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1351575 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1574794 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1773502 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1959278 4295533 ~ 4320141 (+) True G405842

Expression Profile