Item | Value |
---|---|
RNA id | TCONS_00019487 |
length | 3879 |
RNA type | mRNA |
GC content | 0.51 |
exon number | 19 |
gene id | XLOC_009734 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_007127.7 |
NCBI id | CM002900.2 |
chromosome length | 55266484 |
location | 11483811 ~ 11555934 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0035249 | synaptic transmission, glutamatergic | biological_process |
GO:0006811 | ion transport | biological_process |
GO:0050804 | modulation of chemical synaptic transmission | biological_process |
GO:0045202 | synapse | cellular_component |
GO:0005886 | plasma membrane | cellular_component |
GO:0045211 | postsynaptic membrane | cellular_component |
GO:0030054 | cell junction | cellular_component |
GO:0016020 | membrane | cellular_component |
GO:0016021 | integral component of membrane | cellular_component |
GO:0038023 | signaling receptor activity | molecular_function |
GO:0015276 | ligand-gated ion channel activity | molecular_function |
GO:1904315 | transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential | molecular_function |
GO:0005216 | ion channel activity | molecular_function |
GO:0004970 | ionotropic glutamate receptor activity | molecular_function |
GO:0008066 | glutamate receptor activity | molecular_function |
id | description |
---|---|
ko04080 | Neuroactive ligand-receptor interaction |
ko04724 | Glutamatergic synapse |
ko04040 | Ion channels |
id | description |
---|---|
ZDB-GENE-070821-6 | Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Is expressed in brain; eye; retinal inner plexiform layer; retinal outer plexiform layer; and retinal photoreceptor layer. Orthologous to human GRIK5 (glutamate ionotropic receptor kainate type subunit 5). |
ensembl_id | ENSDART00000173042 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00021686 | lncRNA | upstream | 106966 | 11361760 ~ 11376845 (+) | True | XLOC_009733 |
TCONS_00019484 | lncRNA | upstream | 200209 | 11275659 ~ 11283602 (+) | True | XLOC_009731 |
TCONS_00021685 | lncRNA | upstream | 317099 | 11151776 ~ 11166712 (+) | False | XLOC_009730 |
TCONS_00021895 | lncRNA | upstream | 563846 | 10918909 ~ 10919965 (+) | False | XLOC_009728 |
TCONS_00019475 | lncRNA | upstream | 621669 | 10859429 ~ 10862142 (+) | True | XLOC_009727 |
TCONS_00021896 | lncRNA | downstream | 17255 | 11573189 ~ 11573798 (+) | False | XLOC_009736 |
TCONS_00021687 | lncRNA | downstream | 24718 | 11580652 ~ 11583878 (+) | True | XLOC_009737 |
TCONS_00019501 | lncRNA | downstream | 152576 | 11708510 ~ 11709498 (+) | True | XLOC_009744 |
TCONS_00021897 | lncRNA | downstream | 561697 | 12117631 ~ 12118526 (+) | False | XLOC_009751 |
TCONS_00021898 | lncRNA | downstream | 561697 | 12117631 ~ 12139336 (+) | True | XLOC_009751 |
TCONS_00019485 | mRNA | upstream | 139084 | 11297703 ~ 11344727 (+) | True | XLOC_009732 |
TCONS_00019482 | mRNA | upstream | 191663 | 11242443 ~ 11292148 (+) | False | XLOC_009731 |
TCONS_00019481 | mRNA | upstream | 259367 | 11188810 ~ 11224444 (+) | True | XLOC_009730 |
TCONS_00019480 | mRNA | upstream | 260986 | 11151699 ~ 11222825 (+) | False | XLOC_009730 |
TCONS_00019479 | mRNA | upstream | 341014 | 11029762 ~ 11142797 (+) | True | XLOC_009729 |
TCONS_00019488 | mRNA | downstream | 2934 | 11558868 ~ 11569729 (+) | False | XLOC_009735 |
TCONS_00019489 | mRNA | downstream | 2971 | 11558905 ~ 11567444 (+) | True | XLOC_009735 |
TCONS_00019490 | mRNA | downstream | 17537 | 11573471 ~ 11578407 (+) | True | XLOC_009736 |
TCONS_00019491 | mRNA | downstream | 29642 | 11585576 ~ 11593545 (+) | True | XLOC_009738 |
TCONS_00019492 | mRNA | downstream | 41452 | 11597386 ~ 11598447 (+) | True | XLOC_009739 |
TCONS_00019483 | other | upstream | 192928 | 11242560 ~ 11290883 (+) | False | XLOC_009731 |
TCONS_00019473 | other | upstream | 627402 | 10841164 ~ 10856409 (+) | False | XLOC_009727 |
TCONS_00019457 | other | upstream | 1159146 | 10324549 ~ 10324665 (+) | True | XLOC_009715 |
TCONS_00019455 | other | upstream | 1190874 | 10284258 ~ 10292937 (+) | True | XLOC_009713 |
TCONS_00019443 | other | upstream | 1925708 | 9540033 ~ 9558103 (+) | True | XLOC_009705 |
TCONS_00019500 | other | downstream | 144712 | 11700646 ~ 11703337 (+) | False | XLOC_009744 |
TCONS_00019511 | other | downstream | 685556 | 12241490 ~ 12245896 (+) | False | XLOC_009752 |
TCONS_00019517 | other | downstream | 744235 | 12300169 ~ 12300286 (+) | True | XLOC_009755 |
TCONS_00019518 | other | downstream | 824796 | 12380730 ~ 12380846 (+) | True | XLOC_009756 |
TCONS_00019534 | other | downstream | 1868614 | 13424548 ~ 13441633 (+) | False | XLOC_009767 |
species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
---|---|---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000016_04743905_04763216.mRNA | True | 3438 | mRNA | 0.52 | 18 | CI01000016 | 4743821 ~ 4763507 (+) |