RNA id: TU468722


Basic Information

Item Value
RNA id TU468722
length 313
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G407927
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6392044 ~ 6392356 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAGGAAATTACTGGTCATCCAATTTTTTATATCAGCTATGCATTCTGTTAATTTTGTGAATTGGTAAGTTTCGTCAGGGCGCGAAGAAATATAGAGCTGAGTATCATCAGCGTAACAGTGAAAACTAACGCCATGCTTCCTAATGATATCTCCCAAGGGTAGCATGTACAGAGTGAACAGCAACGGTCCTAGTACTGAGCCTTGCAGTACTCCATACTGAACTTGTGATCGATATGACATCTCTTCGTTTACTACTACAGACTGATAACGGTCAGATAAGTAAGATTTGAACCATGACAATGCAATTCCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468784 lncRNA downstream 2400 6389376 ~ 6389644 (-) True G407986
TU468734 lncRNA downstream 159769 6226412 ~ 6232275 (-) True G407939
TU468718 lncRNA downstream 169665 6220766 ~ 6222379 (-) True G407923
TU468771 lncRNA downstream 208509 6183135 ~ 6183535 (-) False G407975
TU468799 lncRNA upstream 24770 6417126 ~ 6432767 (-) True G408001
TU468808 lncRNA upstream 47165 6439521 ~ 6439736 (-) True G408009
TU468809 lncRNA upstream 47891 6440247 ~ 6440470 (-) True G408010
TU468810 lncRNA upstream 48985 6441341 ~ 6441631 (-) True G408011
TU468812 lncRNA upstream 50117 6442473 ~ 6442776 (-) True G408013
CI01000299_06362136_06376918.mRNA mRNA downstream 14809 6362004 ~ 6377235 (-) True CI01000299_06362136_06376918
CI01000299_06352251_06359190.mRNA mRNA downstream 31841 6351435 ~ 6360203 (-) True CI01000299_06352251_06359190
CI01000299_06337727_06341840.mRNA mRNA downstream 50204 6337139 ~ 6341840 (-) True CI01000299_06337727_06341840
CI01000299_06320613_06321046.mRNA mRNA downstream 70998 6320564 ~ 6321046 (-) True CI01000299_06320613_06321046
CI01000299_06310939_06311125.mRNA mRNA downstream 80815 6310939 ~ 6311229 (-) True CI01000299_06310939_06311125
CI01000299_06476844_06477950.mRNA mRNA upstream 83627 6475983 ~ 6479549 (-) True CI01000299_06476844_06477950
CI01000299_06497414_06502931.mRNA mRNA upstream 104800 6497156 ~ 6502931 (-) True CI01000299_06497414_06502931
CI01000299_06505676_06510021.mRNA mRNA upstream 113201 6505557 ~ 6510144 (-) True CI01000299_06505676_06510021
CI01000299_06516832_06521405.mRNA mRNA upstream 124239 6516595 ~ 6521405 (-) True CI01000299_06516832_06521405
CI01000299_06522084_06525262.mRNA mRNA upstream 129612 6521968 ~ 6525262 (-) True CI01000299_06522084_06525262
TU468578 other downstream 467911 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 556055 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 935936 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1463226 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1841323 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 139645 6532144 ~ 6534655 (-) True G407899

Expression Profile