RNA id: TCONS_00021896


Basic Information

Item Value
RNA id TCONS_00021896
length 452
lncRNA type sense_over
GC content 0.43
exon number 2
gene id XLOC_009736
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11573189 ~ 11578407 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gagtgtacgaatgtttctcagtactgagttgcagctggaagggcaaccagctgtgtaaatcatatgctggataagagttggcggttcattctgctctgggggccgctgatgaaaaaagggactaagcgaaaggaaaataaatgaatgagtgaatgaataattgtGCAGCACTAGGTGGCGCAGTGAGCTCTCCGTCTTCATTCTCAGCAGTCTCTGTATCAGCAGTTTATCATTGACTGAAATCTGAAGTTAACGATTTGAGCTAGCATTCCTGACAGATCGCTTGATCATGATGGTTTCACATGGATTATTCTGGACTCTGTGGATGGTGACATGTTTTGGAGAATGTTTAGGTCAAGATCTTCAGTTTCCTGAGCTGCATGGAGCAATAGGAGGAAGTGTGAGATTCACCCCTAATAATCCACCATCTTCAATTGATGTATAGTTACCTG

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0007492 endoderm development biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0048264 determination of ventral identity biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0060030 dorsal convergence biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0060182 apelin receptor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021686 lncRNA upstream 196344 11361760 ~ 11376845 (+) True XLOC_009733
TCONS_00019484 lncRNA upstream 289587 11275659 ~ 11283602 (+) True XLOC_009731
TCONS_00021685 lncRNA upstream 406477 11151776 ~ 11166712 (+) False XLOC_009730
TCONS_00021895 lncRNA upstream 653224 10918909 ~ 10919965 (+) False XLOC_009728
TCONS_00019475 lncRNA upstream 711047 10859429 ~ 10862142 (+) True XLOC_009727
TCONS_00021687 lncRNA downstream 6854 11580652 ~ 11583878 (+) True XLOC_009737
TCONS_00019501 lncRNA downstream 134712 11708510 ~ 11709498 (+) True XLOC_009744
TCONS_00021897 lncRNA downstream 543833 12117631 ~ 12118526 (+) False XLOC_009751
TCONS_00021898 lncRNA downstream 543833 12117631 ~ 12139336 (+) True XLOC_009751
TCONS_00019512 lncRNA downstream 669785 12243583 ~ 12246124 (+) True XLOC_009752
TCONS_00019488 mRNA upstream 3460 11558868 ~ 11569729 (+) False XLOC_009735
TCONS_00019489 mRNA upstream 5745 11558905 ~ 11567444 (+) True XLOC_009735
TCONS_00019487 mRNA upstream 17255 11483811 ~ 11555934 (+) False XLOC_009734
TCONS_00019486 mRNA upstream 17255 11483811 ~ 11555934 (+) True XLOC_009734
TCONS_00019485 mRNA upstream 228462 11297703 ~ 11344727 (+) True XLOC_009732
TCONS_00019491 mRNA downstream 11778 11585576 ~ 11593545 (+) True XLOC_009738
TCONS_00019492 mRNA downstream 23588 11597386 ~ 11598447 (+) True XLOC_009739
TCONS_00019493 mRNA downstream 29298 11603096 ~ 11621551 (+) True XLOC_009740
TCONS_00019494 mRNA downstream 50158 11623956 ~ 11642009 (+) True XLOC_009741
TCONS_00019495 mRNA downstream 78793 11652591 ~ 11653478 (+) True XLOC_009742
TCONS_00019483 other upstream 282306 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019473 other upstream 716780 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019457 other upstream 1248524 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 1280252 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 2015086 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019500 other downstream 126848 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019511 other downstream 667692 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 726371 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019518 other downstream 806932 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019534 other downstream 1850750 13424548 ~ 13441633 (+) False XLOC_009767

Expression Profile

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