RNA id: TU469855



Basic Information


Item Value
RNA id TU469855
length 1650
RNA type TUCP
GC content 0.37
exon number 3
gene id G408928
representative False

Chromosome Information


Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1749900 ~ 1759036 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AATAGATCATATGACCACATTTTCCCTGTAGAGATCCAAGGAGCCCATTTTAAAATAGATATAGAGAGTGAGAGATAGGTCATTTATTCATCCATTCATTCATTTCTCACTGTATTATTCAAGATCGACCTCACGTATCTCATTGTTTGTGTTCCTGTAGGCTCGCTGACGTGTTTTCGGTGATGGTGACATTGTGATAGGTCGTTGCGAAGGGTGGAGAGAAGGTGCACAGACGTAACTTCCCATCGACATCGTGCTCTGATCACTGCATTGAATGACTATGAGTAGCAGCAGACTTTATTTACGACTTCAATCATGTCGTTTTTATTCCGGTGGTATGAGAGCGACGTATCACCGGACCCTGGACAGGATCGAGTTAATGCTGCCGCCTAAATTAAGACCTCTCTACAATCATCCTGCTGGGCCAAAGACGGTTTTCTTCTGGGCACCTGTTTTTAAATGGGGTTTAGTTGTCGCTGGATTTTCTGATTTGACCCGGCCACCAGAAAAGCTCAGTCTCTCTCAGTCCTGCGTCATTACAGCCACAGGATTAATTTGGTCAAGGTACTGCTTGGTGATCATTCCCAAGAACTGGGCTCTGTTTGCTGTTAACTTCTTCCTGGGCATATGTGGAACCACCCAGCTCGTAAGAATATGGAGGTACAACCAACAGCTACAGGAGAAAGGAGAGGAAGTGCAGCAGACTTGAAGTGCCATTTAGTCTGACAGAAGTGGAACGGTGAACAAGTTTTGCTGTTTTTCAGTTACTGTAAAAGCAATGGATCAGCATTTTGCACACAGAATTTGTTATATAGATCAAACATATCTGTGTAAAATAGAAAAAAAAAAATGTCAATCATATTGTTTAAAATGTTATCACATAAAATTGTGATATGATGATTGTAATTCTGGTGTTCTTGATTGTATACTGTACTTTGTTGTTATTCTGATCCACTTCTATCAATTTCTCAGTTTTAAAGGGGTCATATCATCATAATAATAATAAAATAAGTTGTGCCTATAATATTAATGTTTTTTTGTTTTGTTTTTTCTTGTTTTGTGCCAAAACAGTCACAATTTAGTTTTTTTAAGACTTGAAAAGAAAACCTAAAAATTACAGTTGTATTCCTCATTATTAGGTTGCTTTGGATAAAAGTGCCTGCTAATTGAATAAATGTACATGTGCGATACAAACTGCTAAGATCAAACTGAAATGTCCAGGGATATTGTTAAAAATAAGAACTCAATGTTTTGTGTTCTGAAAGTCACAATGTTTTTCCAGTACTTAATTTTTTTTTTTTTTTTTTCTCAAAAGATTAAGGGGTAATTTGATTCCTCATGATATGACCCCTTTAAAATAAAAAAATAATAATAAAAAAATAATGGTCATATGGCAAAACTACCATCCTGCATGAATGCACTGTATGCCAAATGTTGTCTGTTTTGCATTAGAGAGCTCAGATGAAAACAGGAAGTGGGTAAAAGGCATTACCAGATCAGTCACAGACTTTCACATGTACACAACAGACACGCATGATAGATGATAGACATGATGTTTTAAAGTGTTTTTGTTTGTAGCACTTTATTGCACATAATAGTAATATCTCTGTCAATTTATGCTTTTATTAAATCAAAATTGAAATTACATTGATAAATGGGACAAAAGACTGTTTTGTATTCTCACATCTTTGCATTTTGAGCCCACAGTGCACTTTTCTCCAGAGCTGCATCCTACACACTGTGTCATTAAGCACCGTACATTTCCAGACCCTCTCCACTGCTAAATCAGGAATCAAGGGTGTATGACAAACACATGCCCCATTTTGTTCCCTCATGCTAAATTTGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU469857 lncRNA upstream 5127 1735498 ~ 1744773 (+) True G408929
TU469862 lncRNA upstream 19473 1725424 ~ 1730427 (+) True G408934
TU469870 lncRNA upstream 65306 1684267 ~ 1684594 (+) True G408942
TU469836 lncRNA upstream 117017 1632453 ~ 1632883 (+) True G408909
TU469819 lncRNA upstream 199512 1546837 ~ 1550388 (+) True G408894
TU469904 lncRNA downstream 27458 1786494 ~ 1786724 (+) True G408976
TU469935 lncRNA downstream 119250 1878286 ~ 1878873 (+) True G409006
TU469950 lncRNA downstream 171195 1930231 ~ 1959590 (+) True G409018
TU469964 lncRNA downstream 204236 1963272 ~ 1964097 (+) True G409028
TU470061 lncRNA downstream 546033 2305069 ~ 2306889 (+) True G409117
CI01000300_01571005_01611574.mRNA mRNA upstream 138326 1569612 ~ 1611574 (+) True CI01000300_01571005_01611574
CI01000300_01527830_01531871.mRNA mRNA upstream 217881 1527830 ~ 1532019 (+) True CI01000300_01527830_01531871
CI01000300_01519715_01526925.mRNA mRNA upstream 222749 1519579 ~ 1527151 (+) True CI01000300_01519715_01526925
CI01000300_01513060_01515885.mRNA mRNA upstream 234015 1512905 ~ 1515885 (+) True CI01000300_01513060_01515885
CI01000300_01480400_01484276.mRNA mRNA upstream 265187 1479834 ~ 1484713 (+) True CI01000300_01480400_01484276
CI01000300_01772239_01783579.mRNA mRNA downstream 12748 1771784 ~ 1783801 (+) True CI01000300_01772239_01783579
CI01000300_01801423_01807504.mRNA mRNA downstream 42387 1801423 ~ 1808125 (+) True CI01000300_01801423_01807504
CI01000300_01976057_01980856.mRNA mRNA downstream 217021 1976057 ~ 1981187 (+) True CI01000300_01976057_01980856
CI01000300_02313596_02320912.mRNA mRNA downstream 553479 2312515 ~ 2321088 (+) False CI01000300_02313596_02320912
CI01000300_02340225_02344792.mRNA mRNA downstream 579752 2338788 ~ 2344976 (+) True CI01000300_02340225_02344792
TU469837 other upstream 114931 1633030 ~ 1634969 (+) True G408910
TU469410 other upstream 729166 1017067 ~ 1020734 (+) True G408498
TU469422 other upstream 772801 976600 ~ 977099 (+) True G408510
TU470056 other downstream 554373 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912
TU471035 other downstream 1512649 3271685 ~ 3272398 (+) True G409984
TU471334 other downstream 2142152 3901950 ~ 3902151 (+) True G410258
TU471472 other downstream 2364662 4123698 ~ 4124416 (+) True G410382
TU471478 other downstream 2436610 4195646 ~ 4196555 (+) True G410388

Expression Profile