RNA id: TCONS_00019498


Basic Information

Item Value
RNA id TCONS_00019498
length 1838
RNA type mRNA
GC content 0.39
exon number 9
gene id XLOC_009744
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11683548 ~ 11709759 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGTAGTTTCTGGCAGATGAGAGCTTGATCATGATGGTTTCTCATGGTTTATTATGGACCCTCTGGATGTTGGCCTGTTTTGGTCAAAGTTTTGGTGAAGATTTTCAGTTTCCTGAACTGACTAATGGGGCAGTAGGAGGAAGTGTAAAGTTTACACCTAATAACTTACCATCAGAGATTGATACAGTTACCTGGCAATTTGGACAAACTTTTATATTGTCTGGAAACCCTGATACAGCCTCAATAGTCTCAGcatataaaaacagatccagttTTGACAAAAACACTCTTGCTCTGGAGCTCTGGAACCTAAAACTGGAGGATGCTGGACCATACAGTCTGACTGTTATTAAAACGATATATCATGTCACTGTTACTGGTCCACAAACTGAAGCATTAATCGAGGGTGAATCATCTGCCAACTTCACCTCTGAGGGAAGCGGAGGCACCATCACCTCTGTGCAGTGGATGAAAGACAACAGTCCTCTGTCTCCTAATAGCAGAATCATCTTTTCTTCTGATAACAGATCAGTGTCAATCAGTCCAGTGCAGAGATCAGACACTGGAGAATATCTCTGTATATACAGTAACCCTGTCAGCTCTGCAAGTAACTCACAACCCCTGATCATCAATTATGGACCAGATGATGTTTCTATTACAGGTCCAGATGTGGTGGATTTAGAGGTTCAAGTGTCTCTGTCTTGCTCTGCAAAGTCTGAACCTTCTGCTTCATTCAACTGGACGTTTAATGGGTCAGACACTGGTGTGAATACAGACAATTTCACCATTGAAAAGACAGACTTCACAGACAGTGGAGAATACATCTGTACAGCCTATAATAAAGTCACAAAGAGAAAAGATTTGAAAATACATCCTTTACAAGTTCAAGAGGGTGGTGAAGCGGGTTTAGGAGGAGGACTGTCAGCGGGAGCAATAGCAGGGATTGTCATTGGAGTTTTAGTGGCAGTTGGAGGCATCTGTGGTCTTATTGTCTACTTAACAAAAACCAACAAAATCCCAAAACTAAGTTATCAATCAAAAGGAAACACAAGTGGAGCTCAAAGAGGACAAGATGCTGAGCTGAACTATGCAGACATCAGCCATTTTCAGAAGAACAGTGGAGAGAGAGTGGTTTTGGGAGATGTGAATGAACCGAGAACGGAGTATGCAGAAGTACGGCATGGATCAAAGTTGAGGGCTCCTCCACCTCCATATGGAAGTCAGGTATCAAACCCTCCTCCTGTGCGCAGGTGAGGAAGCGAAGACACTGAAACATCTACTGCACTGAGTCTTCCTGCACATTGCACATTTCACACACTTTGTGttctatttaattttgtttattactcTGGATGTAGTTGTGTAAATGAAAtgtaaatcattatttaattatgGTTTGTAAAGATTCAACCTTGTCATTTTCCACAAGTAAGAAACAGGAAGGGTTGTAACCTTTTGCTTTAACCGCTATTGCTTAGTGCTATGTACTTAACATTTTGAAACAATTCTCCAACATTTATCTGATAAGCATTGATGTTATTTTGAAATCTACAGTGTAAAAGGAAGATgatgaacacaaactgttgttACAACATATCACCTACTTTAGTAACAGTAGATGAGGTATCAACAAAATTATAAACCTTATAGAATTATCTATGAATTCTGCGGATGCATTTATTTTCACTAAAATtaactggaaaaaaaacagcctttcaCTGTCCAAGCTTGTTGCAAGCCTTCCCCACTCAGAGatgatattattttttgttgttatatatTAATGGAAATTTTGAACCAAGTTTTAAATACTGATCAGTTGATTAAGATGAAACTG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100921-33 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000138000

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021687 lncRNA upstream 99670 11580652 ~ 11583878 (+) True XLOC_009737
TCONS_00021896 lncRNA upstream 109750 11573189 ~ 11573798 (+) False XLOC_009736
TCONS_00021686 lncRNA upstream 306703 11361760 ~ 11376845 (+) True XLOC_009733
TCONS_00019484 lncRNA upstream 399946 11275659 ~ 11283602 (+) True XLOC_009731
TCONS_00021685 lncRNA upstream 516836 11151776 ~ 11166712 (+) False XLOC_009730
TCONS_00021897 lncRNA downstream 408040 12117631 ~ 12118526 (+) False XLOC_009751
TCONS_00021898 lncRNA downstream 408040 12117631 ~ 12139336 (+) True XLOC_009751
TCONS_00019512 lncRNA downstream 533992 12243583 ~ 12246124 (+) True XLOC_009752
TCONS_00019528 lncRNA downstream 1031321 12740912 ~ 12744284 (+) False XLOC_009761
TCONS_00019529 lncRNA downstream 1037627 12747218 ~ 12748918 (+) True XLOC_009761
TCONS_00019497 mRNA upstream 2578 11660862 ~ 11680970 (+) True XLOC_009743
TCONS_00019496 mRNA upstream 6011 11660839 ~ 11677537 (+) False XLOC_009743
TCONS_00019495 mRNA upstream 30070 11652591 ~ 11653478 (+) True XLOC_009742
TCONS_00019494 mRNA upstream 41539 11623956 ~ 11642009 (+) True XLOC_009741
TCONS_00019493 mRNA upstream 61997 11603096 ~ 11621551 (+) True XLOC_009740
TCONS_00019502 mRNA downstream 14639 11724230 ~ 11760596 (+) True XLOC_009745
TCONS_00019503 mRNA downstream 69943 11779534 ~ 11785286 (+) False XLOC_009746
TCONS_00019504 mRNA downstream 70170 11779761 ~ 11780547 (+) True XLOC_009746
TCONS_00019505 mRNA downstream 108535 11818126 ~ 11825303 (+) True XLOC_009747
TCONS_00019506 mRNA downstream 124925 11834516 ~ 11840134 (+) True XLOC_009748
TCONS_00019483 other upstream 392665 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019473 other upstream 827139 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019457 other upstream 1358883 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 1390611 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 2125445 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019511 other downstream 531899 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 590578 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019518 other downstream 671139 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019534 other downstream 1714957 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other downstream 1714960 13424551 ~ 13441595 (+) False XLOC_009767

Expression Profile

//