RNA id: TCONS_00019500


Basic Information

Item Value
RNA id TCONS_00019500
length 742
RNA type processed_transcript
GC content 0.42
exon number 3
gene id XLOC_009744
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11683548 ~ 11709759 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCAAAGTTTTGGTGAAGATTTTCAGTTTCCTGAACTGACTAATGGGGCAGTAGGAGGAAGTGTAAAGTTTACACCTAATAACTTACCATCAGAGATTGATACAGTTACCTGGCAATTTGGACAAACTTTTATATTGTCTGGAAACCCTGATACAGCCTCAATAGTCTCAGcatataaaaacagatccagttTTGACAAAAACACTCTTGCTCTGGAGCTCTGGAACCTAAAACTGGAGGATGCTGGACCATACAGTCTGACTGTTATTAGTAATGGAAATCAACATAGAGGAGAAACTTCACTACAGGTGTTCGAAACGATATATCATGTCACTGTTACTGGTCCACAAACTGAAGCATTAATCGAGGGTGAATCATCTGCCAACTTCACCTCTGAGGGAAGCGGAGGCACCATCACCTCTGTGCAGTGGATGAAAGACAACAGTCCTCTGTCTCCTAATAGCAGAATCATCTTTTCTTCTGATAACAGATCAGTGTCAATCAGTCCAGTGCAGAGATCAGACACTGGAGAATATCTCTGTATATACAGTAACCCTGTCAGCTCTGCAAGTAACTCACAACCCCTGATCATCAATTATGGACCAGATGATGTTTCTATTACAGGTCCAGATGTGGTGGATTTAGAGGTTCAAGTGTCTCTGTCTTGCTCTGCAAAGTCTGAACCTTCTGCTTCATTCAACTGGACGTTTAATGGGTCAGACACTGGTGTGAATACAGACAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100921-33 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000141082

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021687 lncRNA upstream 116768 11580652 ~ 11583878 (+) True XLOC_009737
TCONS_00021896 lncRNA upstream 126848 11573189 ~ 11573798 (+) False XLOC_009736
TCONS_00021686 lncRNA upstream 323801 11361760 ~ 11376845 (+) True XLOC_009733
TCONS_00019484 lncRNA upstream 417044 11275659 ~ 11283602 (+) True XLOC_009731
TCONS_00021685 lncRNA upstream 533934 11151776 ~ 11166712 (+) False XLOC_009730
TCONS_00019501 lncRNA downstream 5173 11708510 ~ 11709498 (+) True XLOC_009744
TCONS_00021897 lncRNA downstream 414294 12117631 ~ 12118526 (+) False XLOC_009751
TCONS_00021898 lncRNA downstream 414294 12117631 ~ 12139336 (+) True XLOC_009751
TCONS_00019512 lncRNA downstream 540246 12243583 ~ 12246124 (+) True XLOC_009752
TCONS_00019528 lncRNA downstream 1037575 12740912 ~ 12744284 (+) False XLOC_009761
TCONS_00019497 mRNA upstream 19676 11660862 ~ 11680970 (+) True XLOC_009743
TCONS_00019496 mRNA upstream 23109 11660839 ~ 11677537 (+) False XLOC_009743
TCONS_00019495 mRNA upstream 47168 11652591 ~ 11653478 (+) True XLOC_009742
TCONS_00019494 mRNA upstream 58637 11623956 ~ 11642009 (+) True XLOC_009741
TCONS_00019493 mRNA upstream 79095 11603096 ~ 11621551 (+) True XLOC_009740
TCONS_00019502 mRNA downstream 20893 11724230 ~ 11760596 (+) True XLOC_009745
TCONS_00019503 mRNA downstream 76197 11779534 ~ 11785286 (+) False XLOC_009746
TCONS_00019504 mRNA downstream 76424 11779761 ~ 11780547 (+) True XLOC_009746
TCONS_00019505 mRNA downstream 114789 11818126 ~ 11825303 (+) True XLOC_009747
TCONS_00019506 mRNA downstream 131179 11834516 ~ 11840134 (+) True XLOC_009748
TCONS_00019483 other upstream 409763 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019473 other upstream 844237 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019457 other upstream 1375981 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 1407709 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019443 other upstream 2142543 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019511 other downstream 538153 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 596832 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019518 other downstream 677393 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019534 other downstream 1721211 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other downstream 1721214 13424551 ~ 13441595 (+) False XLOC_009767

Expression Profile

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