RNA id: TCONS_00021897



Basic Information


Item Value
RNA id TCONS_00021897
length 824
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_009751
representative False

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12117631 ~ 12139336 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGAGTGTGAGCGACGGCGTCTGACATCAGCGCTGATAAAGGACAGAAACAGACTCAATAACTCTCTACCCTTTGGCCATAACACAGAAGTGAGAGAGGAGCAAAGTTCTTCTGCATTGCACAAGCCCAAAGTTACAGATAACAGAACTACACTAGCATACTAATGACGATGCCTTGACCTTGACGTCTTTAATGGGAAGTCTATCAAGCATGCAGTGCCTCTGGAAAGAAGCAAAACAAGCTCTTATACTGCTGATCTTTAGTTATTAGGCATTCATAAAGTCAAGCCTCTTGGCCATAACAGGGTCTGAAGTGAAGATCGTTTTCCCAGAATAAATGAACAGAATCTATTTAACTGCAAAAGCCCTTATAGGGGTGATCCGTCATGCAGTGGGTTCAAGGATTACTGGTTTAGGTGAAATGTTGAATTCTTACCCCCTCCCTCCATGCCCTGAGCAGCTGTGTTCACAGCGTGAGACAAGGAGCAGACGATTCGGAGCTCAGGGAACAAGGGAACCCCTTGAGGACCCTCAAACTCAGCAGCTGGACGGGCCAGATGGGGTCCCACCCCGGAGAGGGAGATCTGAGGTGCGTCAGGCTGGAGAACGACCAGGTAACCCTCCAGCTGTCTGAGAGAGAGACAACTCTCCTCACTGAAACACCTGCGGCACAAGAGAAGTTCAACAATATACAACATGTGTACATTTACTGCATGCTACTGTTTTTTAGGTTGCTATGTATTAAGAAATTCTAGATAACATAGCAAGACCCCTTGTTGACATATTTGAGATATGTGGTTTATTTGAACAGCAAAGTTAAAACATA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00019501 lncRNA upstream 408133 11708510 ~ 11709498 (+) True XLOC_009744
TCONS_00021687 lncRNA upstream 533753 11580652 ~ 11583878 (+) True XLOC_009737
TCONS_00021896 lncRNA upstream 543833 11573189 ~ 11573798 (+) False XLOC_009736
TCONS_00021686 lncRNA upstream 740786 11361760 ~ 11376845 (+) True XLOC_009733
TCONS_00019484 lncRNA upstream 834029 11275659 ~ 11283602 (+) True XLOC_009731
TCONS_00019512 lncRNA downstream 125057 12243583 ~ 12246124 (+) True XLOC_009752
TCONS_00019528 lncRNA downstream 622386 12740912 ~ 12744284 (+) False XLOC_009761
TCONS_00019529 lncRNA downstream 628692 12747218 ~ 12748918 (+) True XLOC_009761
TCONS_00021899 lncRNA downstream 844434 12962960 ~ 12963877 (+) True XLOC_009764
TCONS_00021688 lncRNA downstream 993738 13112264 ~ 13115609 (+) True XLOC_009765
TCONS_00019508 mRNA upstream 67869 12022543 ~ 12049762 (+) True XLOC_009750
TCONS_00019507 mRNA upstream 110803 11992498 ~ 12006828 (+) True XLOC_009749
TCONS_00019506 mRNA upstream 277497 11834516 ~ 11840134 (+) True XLOC_009748
TCONS_00019505 mRNA upstream 292328 11818126 ~ 11825303 (+) True XLOC_009747
TCONS_00019503 mRNA upstream 332345 11779534 ~ 11785286 (+) False XLOC_009746
TCONS_00019509 mRNA downstream 117813 12236339 ~ 12245905 (+) False XLOC_009752
TCONS_00019510 mRNA downstream 122079 12240605 ~ 12254994 (+) False XLOC_009752
TCONS_00019513 mRNA downstream 146632 12265158 ~ 12276196 (+) False XLOC_009753
TCONS_00019514 mRNA downstream 149146 12267672 ~ 12276225 (+) True XLOC_009753
TCONS_00019515 mRNA downstream 162506 12281032 ~ 12294463 (+) False XLOC_009754
TCONS_00019500 other upstream 414294 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019483 other upstream 826748 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019473 other upstream 1261222 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019457 other upstream 1792966 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 1824694 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019511 other downstream 122964 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019517 other downstream 181643 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019518 other downstream 262204 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019534 other downstream 1306022 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other downstream 1306025 13424551 ~ 13441595 (+) False XLOC_009767

Expression Profile


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