Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019509 |
| length | 720 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 8 |
| gene id | XLOC_009752 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 12236339 ~ 12254994 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0019242 | methylglyoxal biosynthetic process | biological_process |
| GO:0006094 | gluconeogenesis | biological_process |
| GO:0006096 | glycolytic process | biological_process |
| GO:0019563 | glycerol catabolic process | biological_process |
| GO:0046166 | glyceraldehyde-3-phosphate biosynthetic process | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004807 | triose-phosphate isomerase activity | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0016829 | lyase activity | molecular_function |
| GO:0016853 | isomerase activity | molecular_function |
| GO:0008929 | methylglyoxal synthase activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-020416-4 | Predicted to enable methylglyoxal synthase activity; protein homodimerization activity; and triose-phosphate isomerase activity. Predicted to be involved in several processes, including gluconeogenesis; glyceraldehyde-3-phosphate biosynthetic process; and methylglyoxal biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including brain; cardiovascular system; mesoderm; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in carbohydrate metabolic disorder and triosephosphate isomerase deficiency. Orthologous to human TPI1 (triosephosphate isomerase 1). |
| ensembl_id | ENSDART00000132468 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021898 | lncRNA | upstream | 97003 | 12117631 ~ 12139336 (+) | True | XLOC_009751 |
| TCONS_00021897 | lncRNA | upstream | 117813 | 12117631 ~ 12118526 (+) | False | XLOC_009751 |
| TCONS_00019501 | lncRNA | upstream | 526841 | 11708510 ~ 11709498 (+) | True | XLOC_009744 |
| TCONS_00021687 | lncRNA | upstream | 652461 | 11580652 ~ 11583878 (+) | True | XLOC_009737 |
| TCONS_00021896 | lncRNA | upstream | 662541 | 11573189 ~ 11573798 (+) | False | XLOC_009736 |
| TCONS_00019528 | lncRNA | downstream | 495007 | 12740912 ~ 12744284 (+) | False | XLOC_009761 |
| TCONS_00019529 | lncRNA | downstream | 501313 | 12747218 ~ 12748918 (+) | True | XLOC_009761 |
| TCONS_00021899 | lncRNA | downstream | 717055 | 12962960 ~ 12963877 (+) | True | XLOC_009764 |
| TCONS_00021688 | lncRNA | downstream | 866359 | 13112264 ~ 13115609 (+) | True | XLOC_009765 |
| TCONS_00021900 | lncRNA | downstream | 922967 | 13168872 ~ 13172698 (+) | True | XLOC_009766 |
| TCONS_00019508 | mRNA | upstream | 186577 | 12022543 ~ 12049762 (+) | True | XLOC_009750 |
| TCONS_00019507 | mRNA | upstream | 229511 | 11992498 ~ 12006828 (+) | True | XLOC_009749 |
| TCONS_00019506 | mRNA | upstream | 396205 | 11834516 ~ 11840134 (+) | True | XLOC_009748 |
| TCONS_00019505 | mRNA | upstream | 411036 | 11818126 ~ 11825303 (+) | True | XLOC_009747 |
| TCONS_00019503 | mRNA | upstream | 451053 | 11779534 ~ 11785286 (+) | False | XLOC_009746 |
| TCONS_00019513 | mRNA | downstream | 19253 | 12265158 ~ 12276196 (+) | False | XLOC_009753 |
| TCONS_00019514 | mRNA | downstream | 21767 | 12267672 ~ 12276225 (+) | True | XLOC_009753 |
| TCONS_00019515 | mRNA | downstream | 35127 | 12281032 ~ 12294463 (+) | False | XLOC_009754 |
| TCONS_00019516 | mRNA | downstream | 40243 | 12286148 ~ 12294468 (+) | True | XLOC_009754 |
| TCONS_00019519 | mRNA | downstream | 271630 | 12517535 ~ 12560722 (+) | False | XLOC_009757 |
| TCONS_00019500 | other | upstream | 533002 | 11700646 ~ 11703337 (+) | False | XLOC_009744 |
| TCONS_00019483 | other | upstream | 945456 | 11242560 ~ 11290883 (+) | False | XLOC_009731 |
| TCONS_00019473 | other | upstream | 1379930 | 10841164 ~ 10856409 (+) | False | XLOC_009727 |
| TCONS_00019457 | other | upstream | 1911674 | 10324549 ~ 10324665 (+) | True | XLOC_009715 |
| TCONS_00019455 | other | upstream | 1943402 | 10284258 ~ 10292937 (+) | True | XLOC_009713 |
| TCONS_00019517 | other | downstream | 54264 | 12300169 ~ 12300286 (+) | True | XLOC_009755 |
| TCONS_00019518 | other | downstream | 134825 | 12380730 ~ 12380846 (+) | True | XLOC_009756 |
| TCONS_00019534 | other | downstream | 1178643 | 13424548 ~ 13441633 (+) | False | XLOC_009767 |
| TCONS_00019535 | other | downstream | 1178646 | 13424551 ~ 13441595 (+) | False | XLOC_009767 |
| TCONS_00019585 | other | downstream | 3620319 | 15866224 ~ 15867165 (+) | True | XLOC_009800 |
