RNA id: TCONS_00019512


Basic Information

Item Value
RNA id TCONS_00019512
length 525
lncRNA type retained_intron
GC content 0.48
exon number 4
gene id XLOC_009752
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12236339 ~ 12254994 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGATTCTGGGACactcagagagacgccacgtgtTTGGAGAGAGTGATGAGCTGATCGGCCAGAAGGTGGCTCATGCTCTTGAGAATGGTTTGGGAGTGATCGCCTGCATTGGTGAGAAGCTGGATGAGCGGGAGGCTGGAATCACAGAGAAAGTTGTTTTTGCACAGACCAAGTTCATCGCAGATAACGTGAAGGACTGGAGCAAAGTGGTTCTTGCTTACGAACCTGTATGGGCCATTGGCACTGGTAAAACTGCATCACCTCAGCAGGCTCAGGAGGTGCATGACAAGCTCCGGCAGTGGTTAAAGACCAATGTCTCAGAGGCTGTCGCCAACTCCGTCAGGATCATTTACGGAGGTCAGTCCCCAACAAGTCTGTTTTCAAAGAGCATTTTACTATTGTTTTGGAATAATAAGACTCTTGCATGCGGTTGGATGGCAGTATACACACTACCTGAGGTGAATCTTTCTGTAAAGTGTACTTCAGTGGAATTAATTTCAACTGATGGTCGAttagtgtgtgt

Function

GO:

id name namespace
GO:0019242 methylglyoxal biosynthetic process biological_process
GO:0006094 gluconeogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0019563 glycerol catabolic process biological_process
GO:0046166 glyceraldehyde-3-phosphate biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004807 triose-phosphate isomerase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0008929 methylglyoxal synthase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020416-4 Predicted to enable methylglyoxal synthase activity; protein homodimerization activity; and triose-phosphate isomerase activity. Predicted to be involved in several processes, including gluconeogenesis; glyceraldehyde-3-phosphate biosynthetic process; and methylglyoxal biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including brain; cardiovascular system; mesoderm; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in carbohydrate metabolic disorder and triosephosphate isomerase deficiency. Orthologous to human TPI1 (triosephosphate isomerase 1).

Ensembl:

ensembl_id ENSDART00000142808

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021898 lncRNA upstream 104247 12117631 ~ 12139336 (+) True XLOC_009751
TCONS_00021897 lncRNA upstream 125057 12117631 ~ 12118526 (+) False XLOC_009751
TCONS_00019501 lncRNA upstream 534085 11708510 ~ 11709498 (+) True XLOC_009744
TCONS_00021687 lncRNA upstream 659705 11580652 ~ 11583878 (+) True XLOC_009737
TCONS_00021896 lncRNA upstream 669785 11573189 ~ 11573798 (+) False XLOC_009736
TCONS_00019528 lncRNA downstream 494788 12740912 ~ 12744284 (+) False XLOC_009761
TCONS_00019529 lncRNA downstream 501094 12747218 ~ 12748918 (+) True XLOC_009761
TCONS_00021899 lncRNA downstream 716836 12962960 ~ 12963877 (+) True XLOC_009764
TCONS_00021688 lncRNA downstream 866140 13112264 ~ 13115609 (+) True XLOC_009765
TCONS_00021900 lncRNA downstream 922748 13168872 ~ 13172698 (+) True XLOC_009766
TCONS_00019508 mRNA upstream 193821 12022543 ~ 12049762 (+) True XLOC_009750
TCONS_00019507 mRNA upstream 236755 11992498 ~ 12006828 (+) True XLOC_009749
TCONS_00019506 mRNA upstream 403449 11834516 ~ 11840134 (+) True XLOC_009748
TCONS_00019505 mRNA upstream 418280 11818126 ~ 11825303 (+) True XLOC_009747
TCONS_00019504 mRNA upstream 463036 11779761 ~ 11780547 (+) True XLOC_009746
TCONS_00019513 mRNA downstream 19034 12265158 ~ 12276196 (+) False XLOC_009753
TCONS_00019514 mRNA downstream 21548 12267672 ~ 12276225 (+) True XLOC_009753
TCONS_00019515 mRNA downstream 34908 12281032 ~ 12294463 (+) False XLOC_009754
TCONS_00019516 mRNA downstream 40024 12286148 ~ 12294468 (+) True XLOC_009754
TCONS_00019519 mRNA downstream 271411 12517535 ~ 12560722 (+) False XLOC_009757
TCONS_00019500 other upstream 540246 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019483 other upstream 952700 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019473 other upstream 1387174 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019457 other upstream 1918918 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019455 other upstream 1950646 10284258 ~ 10292937 (+) True XLOC_009713
TCONS_00019517 other downstream 54045 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019518 other downstream 134606 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019534 other downstream 1178424 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other downstream 1178427 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019585 other downstream 3620100 15866224 ~ 15867165 (+) True XLOC_009800

Expression Profile

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