Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019513 |
| length | 836 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 5 |
| gene id | XLOC_009753 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 12265158 ~ 12276225 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006914 | autophagy | biological_process |
| GO:0000045 | autophagosome assembly | biological_process |
| GO:0006995 | cellular response to nitrogen starvation | biological_process |
| GO:0000422 | autophagy of mitochondrion | biological_process |
| GO:0016236 | macroautophagy | biological_process |
| GO:0005776 | autophagosome | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0000421 | autophagosome membrane | cellular_component |
| GO:0031625 | ubiquitin protein ligase binding | molecular_function |
| GO:0050811 | GABA receptor binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040718-462 | Predicted to enable GABA receptor binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in autophagosome assembly; autophagy of mitochondrion; and cellular response to nitrogen starvation. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Orthologous to several human genes including GABARAP (GABA type A receptor-associated protein). |
| ensembl_id | ENSDART00000133430 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019512 | lncRNA | upstream | 19034 | 12243583 ~ 12246124 (+) | True | XLOC_009752 |
| TCONS_00021898 | lncRNA | upstream | 125822 | 12117631 ~ 12139336 (+) | True | XLOC_009751 |
| TCONS_00021897 | lncRNA | upstream | 146632 | 12117631 ~ 12118526 (+) | False | XLOC_009751 |
| TCONS_00019501 | lncRNA | upstream | 555660 | 11708510 ~ 11709498 (+) | True | XLOC_009744 |
| TCONS_00021687 | lncRNA | upstream | 681280 | 11580652 ~ 11583878 (+) | True | XLOC_009737 |
| TCONS_00019528 | lncRNA | downstream | 464716 | 12740912 ~ 12744284 (+) | False | XLOC_009761 |
| TCONS_00019529 | lncRNA | downstream | 471022 | 12747218 ~ 12748918 (+) | True | XLOC_009761 |
| TCONS_00021899 | lncRNA | downstream | 686764 | 12962960 ~ 12963877 (+) | True | XLOC_009764 |
| TCONS_00021688 | lncRNA | downstream | 836068 | 13112264 ~ 13115609 (+) | True | XLOC_009765 |
| TCONS_00021900 | lncRNA | downstream | 892676 | 13168872 ~ 13172698 (+) | True | XLOC_009766 |
| TCONS_00019510 | mRNA | upstream | 10164 | 12240605 ~ 12254994 (+) | False | XLOC_009752 |
| TCONS_00019509 | mRNA | upstream | 19253 | 12236339 ~ 12245905 (+) | False | XLOC_009752 |
| TCONS_00019508 | mRNA | upstream | 215396 | 12022543 ~ 12049762 (+) | True | XLOC_009750 |
| TCONS_00019507 | mRNA | upstream | 258330 | 11992498 ~ 12006828 (+) | True | XLOC_009749 |
| TCONS_00019506 | mRNA | upstream | 425024 | 11834516 ~ 11840134 (+) | True | XLOC_009748 |
| TCONS_00019515 | mRNA | downstream | 4836 | 12281032 ~ 12294463 (+) | False | XLOC_009754 |
| TCONS_00019516 | mRNA | downstream | 9952 | 12286148 ~ 12294468 (+) | True | XLOC_009754 |
| TCONS_00019519 | mRNA | downstream | 241339 | 12517535 ~ 12560722 (+) | False | XLOC_009757 |
| TCONS_00019520 | mRNA | downstream | 245676 | 12521872 ~ 12560342 (+) | True | XLOC_009757 |
| TCONS_00019521 | mRNA | downstream | 335166 | 12611362 ~ 12617155 (+) | True | XLOC_009758 |
| TCONS_00019511 | other | upstream | 19262 | 12241490 ~ 12245896 (+) | False | XLOC_009752 |
| TCONS_00019500 | other | upstream | 561821 | 11700646 ~ 11703337 (+) | False | XLOC_009744 |
| TCONS_00019483 | other | upstream | 974275 | 11242560 ~ 11290883 (+) | False | XLOC_009731 |
| TCONS_00019473 | other | upstream | 1408749 | 10841164 ~ 10856409 (+) | False | XLOC_009727 |
| TCONS_00019457 | other | upstream | 1940493 | 10324549 ~ 10324665 (+) | True | XLOC_009715 |
| TCONS_00019517 | other | downstream | 23973 | 12300169 ~ 12300286 (+) | True | XLOC_009755 |
| TCONS_00019518 | other | downstream | 104534 | 12380730 ~ 12380846 (+) | True | XLOC_009756 |
| TCONS_00019534 | other | downstream | 1148352 | 13424548 ~ 13441633 (+) | False | XLOC_009767 |
| TCONS_00019535 | other | downstream | 1148355 | 13424551 ~ 13441595 (+) | False | XLOC_009767 |
| TCONS_00019585 | other | downstream | 3590028 | 15866224 ~ 15867165 (+) | True | XLOC_009800 |
